Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10860 298 / 7e-104 CBSX3 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) AT1G47271 163 / 4e-51 Cystathionine beta-synthase (CBS) family protein (.1) AT3G52950 50 / 2e-07 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) AT2G36500 50 / 4e-07 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G63490 49 / 1e-06 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50530 47 / 5e-06 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50640 47 / 5e-06 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT4G36910 40 / 0.0007 CBSX1, CDCP2, LEJ2 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021675 [exp] 357 / 5e-127 AT5G10860 338 / 7e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10019117 [exp] 317 / 3e-111 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10034441 [exp] 321 / 7e-109 AT5G10860 350 / 4e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10001964 [exp] 167 / 3e-52 AT1G47271 202 / 5e-66 Cystathionine beta-synthase (CBS) family protein (.1) Lus10032625 [exp] 45 / 1e-05 AT5G50530 721 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10043123 [exp] 45 / 1e-05 AT5G50530 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10035965 [exp] 44 / 3e-05 AT3G52950 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10025698 [exp] 44 / 4e-05 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10002834 [exp] 42 / 0.0002 AT4G34120 260 / 2e-87 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161500 [exp] 303 / 4e-106 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.017G000100 [exp] 289 / 2e-100 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G228300 [exp] 193 / 1e-62 AT1G47271 251 / 1e-85 Cystathionine beta-synthase (CBS) family protein (.1) Potri.002G034800 [exp] 82 / 4e-20 AT1G47271 102 / 4e-28 Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G070500 [exp] 54 / 2e-08 AT3G52950 750 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.007G098400 [exp] 45 / 2e-05 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.015G098100 [exp] 45 / 2e-05 AT5G50530 628 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.012G099600 [exp] 44 / 3e-05 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10035014 pacid=23162351 polypeptide=Lus10035014 locus=Lus10035014.g ID=Lus10035014.BGIv1.0 annot-version=v1.0 ATGCAAGGCGCTATCGGAGCTTTCTTCTCCAAGGCAGGAGTAGTGAAGACCGGTGTCCTCCAGCACGTCAGGGTGCTGAATCCGGCACTTCGCCCGCTCG TCTTCTCCAGATCTGAGTCGTCCGTCTCTTCCGCGGCTCGCATCGAGGAGCATGGCTTTGAGCACACCACAATCTCTGACGTCTTGTCTGCCAAAGGTAA AGGTGCTGATGGCTCCTGGCTCTGGTGCACCACTGACGACACTGTTTACGATGCTGTTCACTCGATGACTCAGCACAATGTTGGAGCGTTGGTGGTGGTG AAACCTGGAGAGCAGAAATCGATCGCTGGAATCATCACTGAGAGAGATTACCTGAGGAAGATCATAGTGCAGGGAAGATCATCCAAGTCAACAAAAGTCG GGGATATCATGACTGAAGAGAACAAGCTCATAACAGTAACACCTGACACCAAAGTTCTGGTGGCAATGCAACTGATGACTGATAACCGCATCAGGCACAT TCCAGTAATCGATGAAAAGGGGATGAGTGGGATGGTGTCGATTGGTGATGTGGTTCGTGCTGTGGTGAGGGAGCACAGGGAAGAGCTGGACCGACTGAAT GCTTACATTCAAGGAGGTTACTAA
AA sequence Show only first row Show all	>Lus10035014 pacid=23162351 polypeptide=Lus10035014 locus=Lus10035014.g ID=Lus10035014.BGIv1.0 annot-version=v1.0 MQGAIGAFFSKAGVVKTGVLQHVRVLNPALRPLVFSRSESSVSSAARIEEHGFEHTTISDVLSAKGKGADGSWLWCTTDDTVYDAVHSMTQHNVGALVVV KPGEQKSIAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTPDTKVLVAMQLMTDNRIRHIPVIDEKGMSGMVSIGDVVRAVVREHREELDRLN AYIQGGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10035014 [exp]	0	1
AT2G45500			AAA-type ATPase family protein...		Lus10038001 [exp]	3.9	0.8474
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	9.3	0.8441
AT2G01818			PLATZ transcription factor fam...		Lus10028998 [exp]	15.0	0.8156
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10012333 [exp]	16.0	0.8239
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10022943 [exp]	17.0	0.7531
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	21.3	0.8316
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10027276 [exp]	21.5	0.8024
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10038988 [exp]	21.9	0.8079
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	25.0	0.8046
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	25.3	0.8068

Compare expression of checked genes

Lus10035014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.