Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68540 469 / 1e-167 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G25460 407 / 3e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 299 / 9e-101 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G51410 242 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 237 / 2e-76 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 234 / 2e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 217 / 9e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 216 / 9e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 209 / 2e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 209 / 9e-65 M318, TT3, DFR dihydroflavonol 4-reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006141 [exp] 266 / 2e-87 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10009955 [exp] 241 / 5e-78 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 236 / 6e-76 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 235 / 2e-75 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 235 / 2e-75 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 233 / 8e-75 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 233 / 1e-74 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 231 / 4e-74 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019732 [exp] 224 / 3e-71 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G120200 [exp] 520 / 0 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G125400 [exp] 469 / 1e-167 AT1G68540 428 / 1e-151 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G138600 [exp] 273 / 2e-90 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.009G057500 [exp] 242 / 3e-78 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 241 / 6e-78 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 236 / 4e-76 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 229 / 5e-73 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 226 / 5e-72 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 220 / 2e-69 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.003G181400 [exp] 216 / 7e-68 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10035016 pacid=23162463 polypeptide=Lus10035016 locus=Lus10035016.g ID=Lus10035016.BGIv1.0 annot-version=v1.0 ATGGGGAAAGAGTACTGTGTAACGGGGGGAACTGGGTTCATAGCGGCTTACTTGGTCAAGGCTCTGCTTCTCGATGGCCACGTCGTCAGGGCCACTGTCC GCGACCCAGGGGACATGGAGAAAGTTGGGTTTCTGTTGAAATTCAAGGGAGCCAAAGAGAGGCTGAAGCTTGTGAAAGCTGATTTGTTGGTTCCTGCAAG TTTTGATGACGCTGTTCGAGGAGTGGATGGTGTTTTCCACACTGCTTCCCCTGTTCTCGTCCCTTATGATCATAACATTCAGGCAAATCCATGCATAAAG GGAACGCTGAACGTGCTGAACTCCTGCTCAAAATCCAAAACCGTGAAGCGCGTAGTTCTCACTTCCTCGTGCTCTTCCATCCGTTACCGTTACGATTCGC ACCAAGTCTCCCCTCTCAACGAGTCTCACTGGAGCGACCTCGACTACTGCAAATCTTACAATTTGTGGTACGCATTCGCGAAGACAAGTGCTGAGAAAGA AGCATGGATGATGGCTCAAGAGCAAGGAATCGATCTGGTGGTTGTGAACCCCTCCTTCGTGGTGGGCCCGCTCCTTGGTCCGCAACCCACGAGCACCCTC CTCCTCATTCTCGCCATCGTCAAAGGTCTCAAAGGCGAAATTCCAAACACGGCATTGGGGTTTGTTCACATTGAGGATGTGATAGCTACCCATGTCCTGG CTATGGAGGACAGCAGAGCTTCAGGGAGGTTGGTGTGTTCCAGCTCCGTGGCTCATTGGTCCCAAATCATTCACATGCTCAAGGCCAAATACCCTTACTA CCCTTATGAAACCAAGTTGTCGAGCATGAAAGGGGATAGCAACGCGCACAGTATGGACACGAGCAAGATTGCGAAGCTGGGGTTGCCGCCATTCAGAAGC TTGGAGGAGATGTTTGATGACTGCATCAAGAGTTTCCAGGAGAAAGGGTTTCTACATGCCCCAGCTGCTGCCATTTTATACTAG
AA sequence Show only first row Show all	>Lus10035016 pacid=23162463 polypeptide=Lus10035016 locus=Lus10035016.g ID=Lus10035016.BGIv1.0 annot-version=v1.0 MGKEYCVTGGTGFIAAYLVKALLLDGHVVRATVRDPGDMEKVGFLLKFKGAKERLKLVKADLLVPASFDDAVRGVDGVFHTASPVLVPYDHNIQANPCIK GTLNVLNSCSKSKTVKRVVLTSSCSSIRYRYDSHQVSPLNESHWSDLDYCKSYNLWYAFAKTSAEKEAWMMAQEQGIDLVVVNPSFVVGPLLGPQPTSTL LLILAIVKGLKGEIPNTALGFVHIEDVIATHVLAMEDSRASGRLVCSSSVAHWSQIIHMLKAKYPYYPYETKLSSMKGDSNAHSMDTSKIAKLGLPPFRS LEEMFDDCIKSFQEKGFLHAPAAAILY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68540		TKPR2, CCRL6	tetraketide alpha-pyrone reduc...		Lus10035016 [exp]	0	1
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	2.4	0.8685
AT5G65030			unknown protein		Lus10014340 [exp]	6.5	0.8299
AT1G49570			Peroxidase superfamily protein...		Lus10020994 [exp]	6.9	0.8873
AT1G16770			unknown protein		Lus10037300 [exp]	12.4	0.8715
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Lus10012804 [exp]	17.0	0.8621
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	22.6	0.8429
AT3G14260			Protein of unknown function (D...		Lus10008485 [exp]	23.6	0.8031
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10038536 [exp]	25.9	0.8334
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001050 [exp]	28.3	0.8190
AT3G53010			Domain of unknown function (DU...		Lus10042635 [exp]	31.1	0.7825

Compare expression of checked genes

Lus10035016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.