Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68560 1195 / 0 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) AT3G45940 1061 / 0 Glycosyl hydrolases family 31 protein (.1) AT5G11720 800 / 0 Glycosyl hydrolases family 31 protein (.1) AT3G23640 275 / 2e-78 HGL1 heteroglycan glucosidase 1 (.1.2) AT5G63840 261 / 1e-73 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035020 [exp] 1326 / 0 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10034315 [exp] 1293 / 0 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10041457 [exp] 1280 / 0 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10038408 [exp] 785 / 0 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10008067 [exp] 743 / 0 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10021679 [exp] 367 / 1e-119 AT1G68560 286 / 1e-89 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10000779 [exp] 306 / 6e-96 AT5G11720 473 / 1e-160 Glycosyl hydrolases family 31 protein (.1) Lus10033490 [exp] 252 / 2e-70 AT5G63840 1444 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10020887 [exp] 245 / 4e-68 AT5G63840 1435 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G120000 [exp] 1269 / 0 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.010G125800 [exp] 1268 / 0 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.011G154300 [exp] 804 / 0 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154500 [exp] 794 / 0 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G442800 [exp] 789 / 0 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154200 [exp] 787 / 0 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.007G100000 [exp] 259 / 7e-73 AT5G63840 1427 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.001G129600 [exp] 258 / 6e-72 AT3G23640 1463 / 0.0 heteroglycan glucosidase 1 (.1.2) Potri.005G069000 [exp] 249 / 1e-69 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.006G039500 [exp] 85 / 2e-16 AT5G63840 74 / 3e-13 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01055 [flax] [poplar] Glyco_hydro_31 Glycosyl hydrolases family 31
Representative CDS sequence Show only first row Show all	>Lus10035019 pacid=23162364 polypeptide=Lus10035019 locus=Lus10035019.g ID=Lus10035019.BGIv1.0 annot-version=v1.0 ATGCTTCCTCGTTGCTTTTCAAATGTCCTTCATTCTCTTGTCCTCCTCTTCCTCTGCTTCTTCTTCCATGGCGTCATCATAACCTCTGCCTCTGCTTCTG TCCCTTCCAAGATTGGCAACGGCTACCGTCTAATCTCCATTCAACAAACTTCCGACGGAGGCTTACTTGGTCGACTTCAAGTCAAGCAGCCTAACGATAT CTATGGCCCCGACATACCCCTCTTGCAGCTCTTCGTCAAGCATGAAACAGAGGACCGGCTGCGGGTACACATTACAGATGCAGAGAAACAAAGGTGGGAG GTTCCCTACGACATCCTACCACGTCAGCAACCGCCAGCTAGGACGTCAATTACGACGTCGAATCATAACAAGCTGATAAGCATCCAGGACTACTTAACGA CCTCCTGGGGCGAACTGATCTTCAACTACGAAGAGGATCCCTTCAGCTTCTCCGTGTCGAGAAAATCGGACGGCCAAATTCTGTTCGACTCCAAATCCGA AGAGTCCGACACGTTCGGGCCAATGTCGTTCAAGGATCAGTACCTCGAGATATCCACTAAGCTTCCTCAAGAGGAAGCTTCGCTGTACGGACTCGGGGAG AGCACCCGACCCAGCGGGATCAAGCTGAACCCGGGCGACTCGTACACGCTGTACGTGTCGGACGCGATGGCTTACGAAGCGAACATTGGTCTGTGCGGTG CGCACCCGGTTTACATGGACCTCCGGAATCTGAACGGGGCGGCATATGCCCACGGGGTTTTGCTGTTGAACAGCAATGGGATGGACGTTTTCTACAGAGG GAGTTCCTTGACGTACAAGGTTATTGGGGGCGTTTTGGACTTTTACTTCTTTGCTGGTCCGACGCCGTTGAGTGTTGTTGATCAGTACACTTCGTTGATC GGCAGACCTGCTCCCATGCCTTACTGGGCTTTCGGATTCCACCAAAGCAAGTGGGGCTACGGAAACATCGCAATGGTGGAAAACGTTGTAGACAACTACA AGAAGGCCAGAATCCCATTAGACGTGATATGGAGCGACGACGATTACATGGACTTGCACAAAGATTTCACCATAAGCCCCGACAACTATCCTCTCCAACA ACTCAACTCCTTCTTAGACAAGATCCACAGCATCGGAATGAAGTACGTAGTCATCGTTGAACCAGGAATCAGCACCAATTCTACTTACGGAGTCCTCCAG AGAGGATTCGACAACGACGTGTTCCTCAAACAGCACGGCCGGCCCTTATTGGGCCAAGTGTGGGCCGGCCCGGTCCACTTTCCGGACTACCTCAACCCCA AAACACTCTCCTGGTGGACCGACGAAATCCGGGCCTTCCTCCAAAAGGTCCCCGCCGTAGACGGGCTGTGGCTCGACATGAACGAGCCAGTCACGTTCTG CTTCGGGGATTGCAAGTCTCCGGAGCAGTCCGGGAGGCCTTGTCCGGGGGAGGAACCGTTTTGGGTTTGCTGTTTGGATTGTGAGGCCAGTGTGACCACC AGATGGGACGATCCACCATACAAGATTAACATTACTGGATCGCAACAGCCGCTCGGTCGGTTCACTATTTCGACTAGTGCGGTTCATTACAACGGGGTGT TGGAGTACGATGCTCATAATTTGTACGGATTGACGCAGACCATCGCGACTCATAGGAGTTTACTTGATATTCGAGGCGAGAAACGACCGTTTGTGTTGTC GCGCGCCTCATATGTTGGATTGGGGAAGTACGCGGCTCATTGGAGTGGCGACAATAAGGCGACTTGGGATGATTTGAAGTACTCGATAACTACGATGCTG AATTTTGGTATCTTTGGAGTGCCGATGATGGGTTCGGATATATGCGGGTTCTACCCTGCCCCGACAGAGGAGCTCTGCAACCGTTGGATAGAACTCGGTG CATTCTATCCATTCTCTAGGGACCACTCCAACGTGGCGTCCCCGAGCCAGGAGCTTTACATGTGGGAATCGGTGGCCGAATCTGCAAGGAATGCTCTTGG TTTGCGGTACAAGCTACTTCCATATCTATACACGTTGAACTACGAGGCTCACACTACAGGCGCACCAATCTCGAGACCGTTGTTCTTCTCGTTCCCGAAT TACAGCGAATGTTACGGAGTGAGTACGCAATTCTTGCTAGGTAGTACCGTCATGGTTTCTCCCGTGCTCGAGGAAGGGAAGACACAGGTGAATGCGCTCT TCCCTCCAGGATCATGGTACAACATTTTCAACATGTCGCACCATGCGATTGACTCAAAGGGTGAGTACTTCACATTGGAGTCGCCATTGAACTTGATCAA TGTCCATGTGTATCAGAACACAATTCTACCAATGCAGCAAGGAGGGTTGATTTCGAAAGACGCGAGGATGACACCGTTCAGCCTAGTGGTCACGTTCCCC GTTGGAGCTAGAGAAAGCGAAGCGAAAGGGAACCTCTTCATCGACAACGATGACCTTCCGGAGATGAAGCTAGGCAACGGCGAGTCGAGTTACGTAGAAT TTCATGCCAATTTGAGCTACGGATGGGTGAAGTTGTGGTCAGAGGTTAAGGAAGGGGAGTTTGCATTAAGCCAAGGTTTGGCGATTGAAAAGGTTATAGT GCTGGGCTTGGACGGAAGGAAAGGTAGTCCATCGGATCTTCAGTTTTATGGCATCCATACGTCGACGACAACTTCAAAGGCGAACGTAACATCGTCGGAA CAAGTCGTGATCGAGTCTGGCGATGGAAAGAGGAACGAGATTACTACGATGCTAGTAGAGGTAAGCGGGTTGGAAATTCCAATTGGTAAAAGCTTTGGCA TGCTATTCCACATGGAGCCTTGA
AA sequence Show only first row Show all	>Lus10035019 pacid=23162364 polypeptide=Lus10035019 locus=Lus10035019.g ID=Lus10035019.BGIv1.0 annot-version=v1.0 MLPRCFSNVLHSLVLLFLCFFFHGVIITSASASVPSKIGNGYRLISIQQTSDGGLLGRLQVKQPNDIYGPDIPLLQLFVKHETEDRLRVHITDAEKQRWE VPYDILPRQQPPARTSITTSNHNKLISIQDYLTTSWGELIFNYEEDPFSFSVSRKSDGQILFDSKSEESDTFGPMSFKDQYLEISTKLPQEEASLYGLGE STRPSGIKLNPGDSYTLYVSDAMAYEANIGLCGAHPVYMDLRNLNGAAYAHGVLLLNSNGMDVFYRGSSLTYKVIGGVLDFYFFAGPTPLSVVDQYTSLI GRPAPMPYWAFGFHQSKWGYGNIAMVENVVDNYKKARIPLDVIWSDDDYMDLHKDFTISPDNYPLQQLNSFLDKIHSIGMKYVVIVEPGISTNSTYGVLQ RGFDNDVFLKQHGRPLLGQVWAGPVHFPDYLNPKTLSWWTDEIRAFLQKVPAVDGLWLDMNEPVTFCFGDCKSPEQSGRPCPGEEPFWVCCLDCEASVTT RWDDPPYKINITGSQQPLGRFTISTSAVHYNGVLEYDAHNLYGLTQTIATHRSLLDIRGEKRPFVLSRASYVGLGKYAAHWSGDNKATWDDLKYSITTML NFGIFGVPMMGSDICGFYPAPTEELCNRWIELGAFYPFSRDHSNVASPSQELYMWESVAESARNALGLRYKLLPYLYTLNYEAHTTGAPISRPLFFSFPN YSECYGVSTQFLLGSTVMVSPVLEEGKTQVNALFPPGSWYNIFNMSHHAIDSKGEYFTLESPLNLINVHVYQNTILPMQQGGLISKDARMTPFSLVVTFP VGARESEAKGNLFIDNDDLPEMKLGNGESSYVEFHANLSYGWVKLWSEVKEGEFALSQGLAIEKVIVLGLDGRKGSPSDLQFYGIHTSTTTSKANVTSSE QVVIESGDGKRNEITTMLVEVSGLEIPIGKSFGMLFHMEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10035019 [exp]	0	1
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10009419 [exp]	32.9	0.7053
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10035178 [exp]	51.4	0.7167
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10031478 [exp]	70.5	0.6762
					Lus10031737 [exp]	86.2	0.6273
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10022986 [exp]	252.2	0.6425

Compare expression of checked genes

Lus10035019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.