Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68560 1216 / 0 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) AT3G45940 1087 / 0 Glycosyl hydrolases family 31 protein (.1) AT5G11720 780 / 0 Glycosyl hydrolases family 31 protein (.1) AT3G23640 269 / 3e-76 HGL1 heteroglycan glucosidase 1 (.1.2) AT5G63840 253 / 9e-71 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034315 [exp] 1360 / 0 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10041457 [exp] 1335 / 0 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035019 [exp] 1317 / 0 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10038408 [exp] 749 / 0 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10008067 [exp] 748 / 0 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10000779 [exp] 340 / 2e-108 AT5G11720 473 / 1e-160 Glycosyl hydrolases family 31 protein (.1) Lus10021679 [exp] 271 / 1e-83 AT1G68560 286 / 1e-89 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10033490 [exp] 223 / 2e-60 AT5G63840 1444 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10035671 [exp] 214 / 3e-57 AT3G23640 1456 / 0.0 heteroglycan glucosidase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G125800 [exp] 1318 / 0 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.008G120000 [exp] 1301 / 0 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.011G154300 [exp] 782 / 0 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154200 [exp] 775 / 0 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154500 [exp] 766 / 0 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G442800 [exp] 765 / 0 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G129600 [exp] 260 / 7e-73 AT3G23640 1463 / 0.0 heteroglycan glucosidase 1 (.1.2) Potri.007G100000 [exp] 249 / 2e-69 AT5G63840 1427 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.005G069000 [exp] 227 / 6e-62 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.006G039500 [exp] 67 / 4e-11 AT5G63840 74 / 3e-13 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01055 [flax] [poplar] Glyco_hydro_31 Glycosyl hydrolases family 31
Representative CDS sequence Show only first row Show all	>Lus10035020 pacid=23162546 polypeptide=Lus10035020 locus=Lus10035020.g ID=Lus10035020.BGIv1.0 annot-version=v1.0 ATGTTCTCTTCCATGTTTTTTCTGTTTCTCCTCTGCTTCTTCTTCCATGGCGTCATCATAACCTCTTCCTCTGCTTCCGTCCCTTCCAAGATTGGCAACG GCTACCGTCTCATCTCCATCCAACAAACCCCCGACGGAGACTTAGTCGGTCAACTCCAAGTCAAGCAGCCCAACGACATCTATGGCCCCGACATACCCCT CTTGCAGCTCTTCGTCAAGCAGGAAACAGAGGATCGGCTGCGGGTACACCTTAACGATGCAGAGAAACAGAGGTGGGAGGTTCCCTACGCCCTCCTGCCA CGTCATCAGCCGCCATCGAGTAAGAACGGCGGCCTGATCGGCACCGTTCAGGACAATTACTCGACCTCCGGGGAACTGATCTTCAACTACACGGAGGATC CGTTCAGCTTCTCCGTTACGAGGAAATCAAACGGGCAGATTTTGTTCAGCTCCGGGTCGGACTCTTCCCACCCGTTCGGGCCTATGGTCTTCAAGGACCA GTACCTTGAGATATCAACGAAGCTTCCTCCCGAAGCTTCTCTGTACGGACTCGGAGAAAGCACGAGGCCTAGCGGGATCAAGCTAAAGTCTGGAGATTCG TATACTCTGTATACGACGGACAATTCGGCTACGCATTTGAACATGAATCTATACGGGTCGCACCCGGTGTACATGGACCTCCGGAATCTGAACGGGGCGG CATATGCCCACGGGGTTTTGCTGTTGAACAGTAATGGAATGGACGTTTTCTACAGAGGGAGTTCGTTGACGTACAAGGTCATCGGGGGTGTTTTGGACTT TTACTTCTTCAGCGGTCCCACGCCGTTGAGTGTTGTTGATCAGTATACTTCTTTGATCGGCAGGCCGGCTCCCATGCCTTACTGGGCTTTCGGTTTTCAC CAGTGCAAATTCGGGTACCACAACATTTCAATGGTGGAACAAGTAGTCGACAACTACAGAAAGGCCAACATTCCACTGGATGTGATCTGGAACGACGATG ATCACATGGACTTACAGAAGGACTTCACCCTCAGTCCAATCAACTACCCTCTTAAGAACGTCACCTTATTCTTAGACAAGATTCACAGCATCGGGATGAA GTACATCGTTCTCATCGATCCCGGAATCAGCATGAATTCCACCTATGGAGTTTACCAGCGAGGCATCGCCAGTGACGTGTTCATCAAGTATGATGATCAG CCTTTCCTGGCTCAAGTCTGGCCCGGACCGGTCAACTTCCCGGACTTCCTCAACCCCAAAACAGTCTCCTGGTGGGCAGATGAGATTCGTCGCTTCCACG ACATGGTTCCTGTAGACGGTCTGTGGATCGACATGAACGAGATTGCAAACTTCTGTACAGGTCTATGCACGATTCCAGATGGCAGCAACTCGAAGTGTAC AATGGTAGGGAGCCTACCGAGCGTCGAATGTTGCTTGGATTGCAGGAAAACTGTAAATAATAACTCGAAATGGGACGATCCTCCTTACAAGATTAATCTT CGAAACTCGCACGCACCGCTCGGTCTCGGCACCATCGCAGCCAGTGCAGTTCATTACGACGGCGTTTTGGAGTACGATGCACATAGCCTGTACGGATTTT CGCAAGCCGTCGCTACTCATAAGGCGCTTCAGGGTCTTGAAGGAAAACGGCCGTTTATCTTGTCACGTTCTACATTTGTTGGTTCAGGAAAATATGTTGC TCATTGGAGCGGCGACAATGAAGCAAATTGGGAGAATTTGAAGTACTCGATATCTACAATGCTGAATTTCGGCATCTTTGGAGTGCCGATGGTTGGTTCA GATATATGCGGGTTTTTCTCCGCCCCAACAGAGGAGCTCTGCAGCCGTTGGATTGAGCTTGGTGCGTTTTACCCGTTCGCTAGAGATCATGCCGACTTCT ACTCTCCCGGGAAGGAGCTTTACCAATGGGAATCGGTAGCCGAATCCGCAAGAAACGCTCTTGGCTTGAGGTACAAGCTTCTTCCGTATCTATACACGTT AAACTACGAGGCGCATACTACTGGCGCCCCGATCGCTAGGCCACTCTTCTTCTCCTTCCCGAACTATATCGACTGTTACAAGTTGAGCACGCAATTTTTG CTAGGGAGTAGCCTCGTGGTATCACCTGTTCTCGAAGAAGGGAAGACACGAGTTAGTGCGTTGTTCCCATCGGGTTCGTGGTACAACATGTTTAACATGT CTCGTGGCGTTCGTTCGAAGGGGGAGTATTTCGAGTTGGATGCACCATTGCACGTGATCAATGTACATTTGTACGAGAACACAATTCTGCCTATGCAGCA AGGCGGGATGGTTTCGAAAGATGCGAGGATGACGCCATTCAACCTTGTCGTGGCCTTCCCAGCTCGAGCTAGTACTGATGGAGAAGCGAAAGGATGCTTG TTCCTCGACAACGACGAGCTTCCGGAGATGAAGCTAGGCAATGGTGAGTCTAGTTACGTAGATTTCTTTGCTAACGTGAGCAATGGGTACGTGACATTGT GGTCGGAGGTTCGAGAAGGGGCTTTTGTGTCCGAGAAAGGTTTGAAGATAGAGAAGGTGACGGCGCTAGGGTTAGGTGGGAGTGGAGGTGCATATGATGT TCGGATTTATGGGAATACGACCATTTCAAATGTAGAGGTGAGATCATCGGAACAAATGTTGATTGAGTCTGGTGGTGACGTTGAAGGAGATGAAAAGGGT AAGAGTATGATGGTAGAGGTGAGTGGGTTGGAGATCCCACTTGGCATCAACTTTGGCATCACATGGCACATGAAATTATAA
AA sequence Show only first row Show all	>Lus10035020 pacid=23162546 polypeptide=Lus10035020 locus=Lus10035020.g ID=Lus10035020.BGIv1.0 annot-version=v1.0 MFSSMFFLFLLCFFFHGVIITSSSASVPSKIGNGYRLISIQQTPDGDLVGQLQVKQPNDIYGPDIPLLQLFVKQETEDRLRVHLNDAEKQRWEVPYALLP RHQPPSSKNGGLIGTVQDNYSTSGELIFNYTEDPFSFSVTRKSNGQILFSSGSDSSHPFGPMVFKDQYLEISTKLPPEASLYGLGESTRPSGIKLKSGDS YTLYTTDNSATHLNMNLYGSHPVYMDLRNLNGAAYAHGVLLLNSNGMDVFYRGSSLTYKVIGGVLDFYFFSGPTPLSVVDQYTSLIGRPAPMPYWAFGFH QCKFGYHNISMVEQVVDNYRKANIPLDVIWNDDDHMDLQKDFTLSPINYPLKNVTLFLDKIHSIGMKYIVLIDPGISMNSTYGVYQRGIASDVFIKYDDQ PFLAQVWPGPVNFPDFLNPKTVSWWADEIRRFHDMVPVDGLWIDMNEIANFCTGLCTIPDGSNSKCTMVGSLPSVECCLDCRKTVNNNSKWDDPPYKINL RNSHAPLGLGTIAASAVHYDGVLEYDAHSLYGFSQAVATHKALQGLEGKRPFILSRSTFVGSGKYVAHWSGDNEANWENLKYSISTMLNFGIFGVPMVGS DICGFFSAPTEELCSRWIELGAFYPFARDHADFYSPGKELYQWESVAESARNALGLRYKLLPYLYTLNYEAHTTGAPIARPLFFSFPNYIDCYKLSTQFL LGSSLVVSPVLEEGKTRVSALFPSGSWYNMFNMSRGVRSKGEYFELDAPLHVINVHLYENTILPMQQGGMVSKDARMTPFNLVVAFPARASTDGEAKGCL FLDNDELPEMKLGNGESSYVDFFANVSNGYVTLWSEVREGAFVSEKGLKIEKVTALGLGGSGGAYDVRIYGNTTISNVEVRSSEQMLIESGGDVEGDEKG KSMMVEVSGLEIPLGINFGITWHMKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10035020 [exp]	0	1
AT3G49220			Plant invertase/pectin methyle...		Lus10022412 [exp]	3.2	0.8395
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10031039 [exp]	5.7	0.8140
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	5.9	0.8401
AT2G34250			SecY protein transport family ...		Lus10007313 [exp]	7.2	0.7788
AT3G25130			unknown protein		Lus10011835 [exp]	7.7	0.8054
AT5G63180			Pectin lyase-like superfamily ...		Lus10013668 [exp]	10.0	0.8082
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10036763 [exp]	11.0	0.7858
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	14.1	0.8217
AT5G63180			Pectin lyase-like superfamily ...		Lus10013667 [exp]	15.0	0.7935
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	25.9	0.8011

Compare expression of checked genes

Lus10035020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.