Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14990 156 / 2e-50 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021679 [exp] 143 / 1e-42 AT1G68560 286 / 1e-89 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G129900 [exp] 155 / 1e-49 AT1G14990 210 / 6e-72 unknown protein Potri.010G112300 [exp] 154 / 3e-49 AT1G14990 203 / 3e-69 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035021 pacid=23162520 polypeptide=Lus10035021 locus=Lus10035021.g ID=Lus10035021.BGIv1.0 annot-version=v1.0 ATGTCTCACTGGATGACCTCTTGTCGTTTCTCTTACAGGGTGTTGCTGCTGCTGCAAAAGAATGATGCTTGCCAGTGGGATGAAAGAGATACTGAACGTT CAGAAGTTTCGTCGAGTAGTCTCATACACAGGATTCTGTCTTCACTGCTGTCCTTACCTATAACTAGAGCAGGTTTCTCTAGGGATGATCAGTTTTATGC AGCGTATCCTGCTGGAACTGAGCTTTTAACTGACACGGCCAAGTTGTACAAAGCAGCCCTTGGCAGTTGCTTCGAAGTAGACGAATGGGGTCCAGTTGAG TTCTGCATCATGTCTAAGCATTTTGATCGTCAGGGGAAATCACCATATGCATATCACTCGCAATACATGGCACATCTTCTTTCTCACGGTCAACTTGATG GAACCGGCTAG
AA sequence Show only first row Show all	>Lus10035021 pacid=23162520 polypeptide=Lus10035021 locus=Lus10035021.g ID=Lus10035021.BGIv1.0 annot-version=v1.0 MSHWMTSCRFSYRVLLLLQKNDACQWDERDTERSEVSSSSLIHRILSSLLSLPITRAGFSRDDQFYAAYPAGTELLTDTAKLYKAALGSCFEVDEWGPVE FCIMSKHFDRQGKSPYAYHSQYMAHLLSHGQLDGTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14990			unknown protein		Lus10035021 [exp]	0	1
AT1G55170			unknown protein		Lus10041450 [exp]	1.7	0.7821
AT1G48170			unknown protein		Lus10022781 [exp]	8.5	0.7384
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Lus10018756 [exp]	15.2	0.7579
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10023134 [exp]	18.2	0.7559
AT3G50360		CEN1, ATCEN2	CENTRIN 1, centrin2 (.1)		Lus10003320 [exp]	19.4	0.7200
					Lus10043038 [exp]	23.7	0.7441
AT1G79720			Eukaryotic aspartyl protease f...		Lus10024098 [exp]	25.8	0.7455
AT1G48170			unknown protein		Lus10022783 [exp]	29.4	0.7145
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	31.3	0.7514
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Lus10041908 [exp]	33.5	0.7276

Compare expression of checked genes

Lus10035021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.