Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62270 404 / 1e-140 unknown protein AT2G02880 114 / 5e-29 mucin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021682 [exp] 572 / 0 AT5G62270 425 / 7e-149 unknown protein Lus10034311 [exp] 531 / 0 AT5G62270 447 / 3e-157 unknown protein Lus10030486 [exp] 115 / 5e-29 AT2G02880 347 / 7e-120 mucin-related (.1) Lus10012838 [exp] 112 / 7e-28 AT2G02880 346 / 4e-119 mucin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G133900 [exp] 386 / 2e-133 AT5G62270 365 / 3e-124 unknown protein Potri.017G017901 [exp] 281 / 1e-92 AT5G62270 241 / 7e-77 unknown protein Potri.015G004400 [exp] 121 / 7e-32 AT2G02880 335 / 1e-115 mucin-related (.1) Potri.012G021000 [exp] 64 / 4e-12 AT2G02880 161 / 6e-50 mucin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035022 pacid=23162461 polypeptide=Lus10035022 locus=Lus10035022.g ID=Lus10035022.BGIv1.0 annot-version=v1.0 ATGCTCAGGATTCGCCATCTCCTAACTCGACTATCATCAACCACACTCCACACTGGTCGATCATTTCGTCCCCAGGCAAGTCAATTCATTACGACCTGTG GCTTCTCTTCGGAGTCGGGAAATAGTGGAGGTGGGAATGAAGGAAATGATGAATGGGAAAATGCTGCCGCTAGCGGGATATTTGGTCAGACTGCATCTGA TGATCTAGGTTGGGACTCCGTTTCATCATGGTCGACTGGATTGGCCAAGGATCATTTCAACGGTGAGACGGTGGGGAAGAGGGCTAGTTCTTCTTCTTCT TCCCAGTCTCCTGTGATATCTGAGCTGCAAGAGATTGACGATAGGATAAAAGAACTGGATGCTGAAAACAGGAAGGGGAAATTTTTCGTTGACGGATGGG AGCAGAGATTGCTGGAGACAAGTGTGCTATTGAAGCAAGTGGAGGAGCCTGGGGCGAGAGGATCCTACCTTAAGGATTCAGAGAAGGCAGAGATGTATCG GTTGCATAAGGAGAATCCTGAAGAGTACACTGTTGAGAGGCTTGCTAAGGATTACAGGATTATGAGGCAGAGAGTACATGCCATTCTCTGGCTCAAAGAA GATGAGGAGGAGGAGAGGAAGTGTGGTCGTGTTTTGGATGACTCGGTTGAATTGTTACTTGATACCTGCCCAGAATTCTTCAATTCCCATGACCGGGAGT TTCATGTGGCATCCCTTTCTTACAAACCTGATTTTAAGGTGATGCCAGAGGGATGGGATGGTACAATTCGGGATCCAGATGAAGTTCACTATGAGATATC CAAGAAAGAGGATGACATGCTTTACCAAGAGTTTGTCCAGAGGATGGAATTCAACAAAATGAAAGTTGCTGGAATGGTGAAGTGCCATAAGTACAGTAGG CGCCGCCCATCTGAAGGCTGGAACTTCACGGTGGAGAAAATGGGAGCTCAAGGGAAACGTGGAGGTGGGGGTGGCTGGAAGTTTGTAAGCTTGCCCGATG GATCCAGCCGACCTCTAAACGAGACAGAGAAGGTATACGTGAAGAGAGAGACTCCACGACGGAGGCGCAAGATTTTCCCTTGA
AA sequence Show only first row Show all	>Lus10035022 pacid=23162461 polypeptide=Lus10035022 locus=Lus10035022.g ID=Lus10035022.BGIv1.0 annot-version=v1.0 MLRIRHLLTRLSSTTLHTGRSFRPQASQFITTCGFSSESGNSGGGNEGNDEWENAAASGIFGQTASDDLGWDSVSSWSTGLAKDHFNGETVGKRASSSSS SQSPVISELQEIDDRIKELDAENRKGKFFVDGWEQRLLETSVLLKQVEEPGARGSYLKDSEKAEMYRLHKENPEEYTVERLAKDYRIMRQRVHAILWLKE DEEEERKCGRVLDDSVELLLDTCPEFFNSHDREFHVASLSYKPDFKVMPEGWDGTIRDPDEVHYEISKKEDDMLYQEFVQRMEFNKMKVAGMVKCHKYSR RRPSEGWNFTVEKMGAQGKRGGGGGWKFVSLPDGSSRPLNETEKVYVKRETPRRRRKIFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62270			unknown protein		Lus10035022 [exp]	0	1
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10028188 [exp]	2.6	0.9374
AT5G53800			unknown protein		Lus10003591 [exp]	2.8	0.9201
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10000904 [exp]	3.2	0.9358
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10003260 [exp]	6.0	0.9101
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	11.9	0.9205
AT1G80950			Phospholipid/glycerol acyltran...		Lus10032707 [exp]	13.0	0.8861
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10004212 [exp]	17.0	0.9055
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030945 [exp]	18.5	0.8552
AT5G20500			Glutaredoxin family protein (....		Lus10017148 [exp]	19.9	0.9069
AT1G54740			Protein of unknown function (D...		Lus10035353 [exp]	21.1	0.8674

Compare expression of checked genes

Lus10035022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.