Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26000 588 / 0 BRIZ2 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) AT2G42160 364 / 3e-121 BRIZ1 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) AT2G27160 79 / 3e-17 unknown protein AT1G72220 50 / 2e-06 RING/U-box superfamily protein (.1) AT1G72310 46 / 3e-05 ATL3 RING/U-box superfamily protein (.1) AT4G17905 46 / 4e-05 ATL4H RING/U-box superfamily protein (.1) AT2G47560 45 / 5e-05 RING/U-box superfamily protein (.1) AT5G42200 44 / 5e-05 RING/U-box superfamily protein (.1) AT2G34000 44 / 5e-05 RING/U-box superfamily protein (.1) AT2G39100 45 / 7e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021683 [exp] 713 / 0 AT2G26000 565 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Lus10038095 [exp] 387 / 3e-130 AT2G42160 684 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Lus10006651 [exp] 379 / 3e-127 AT2G42160 674 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Lus10005617 [exp] 48 / 1e-06 AT5G42200 108 / 6e-31 RING/U-box superfamily protein (.1) Lus10034551 [exp] 46 / 6e-06 AT5G42200 112 / 2e-32 RING/U-box superfamily protein (.1) Lus10017253 [exp] 45 / 1e-05 AT5G42200 126 / 4e-38 RING/U-box superfamily protein (.1) Lus10021842 [exp] 45 / 2e-05 AT5G42200 103 / 3e-29 RING/U-box superfamily protein (.1) Lus10024635 [exp] 45 / 5e-05 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1) Lus10000333 [exp] 46 / 6e-05 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110500 [exp] 644 / 0 AT2G26000 605 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.007G063900 [exp] 623 / 0 AT2G26000 600 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.018G128100 [exp] 380 / 9e-128 AT2G42160 621 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Potri.003G184800 [exp] 49 / 1e-06 AT2G37580 120 / 6e-34 RING/U-box superfamily protein (.1) Potri.017G038300 [exp] 47 / 7e-06 AT4G26400 68 / 2e-13 RING/U-box superfamily protein (.1.2) Potri.001G159300 [exp] 45 / 2e-05 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1) Potri.009G090100 [exp] 45 / 2e-05 AT2G14830 193 / 3e-64 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.010G243500 [exp] 45 / 2e-05 AT5G06490 113 / 6e-32 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 46 / 3e-05 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 45 / 4e-05 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] RING PF02148 [flax] [poplar] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein CL0221 [flax] [poplar] RRM PF07576 [flax] [poplar] BRAP2 BRCA1-associated protein 2
Representative CDS sequence Show only first row Show all	>Lus10035023 pacid=23162601 polypeptide=Lus10035023 locus=Lus10035023.g ID=Lus10035023.BGIv1.0 annot-version=v1.0 ATGTCTTCCCAATCGAAGTTCACAGACACATCCTCAACAAGCTCAAGCATGTCAATTCCTGGAGGAAGCTCGCCTCCCGATCAATTGCGGCAACCAGTTC CCGCCATCGTCTCCGTCGACACTATAGAAACCTCAACATCAACTTCGTCTTCCACTACTCGGACTCAGACCTTCCATTTTTCCTCCGGAAACCCCAGGAT TGAAGAGACGCGAGGGATCATGCATCTTTTCTCCGAAGACTCTCCTTCCCATCTTCCTATTGGAAGAAAGCCTCTAGTTTCGGTGATTGGGGTGCCAAAT CACATGACATATGCAGATTTTTGCAAGTTCTGTGGCTCTTTTACTCGAAACATCTTAGAGATGCGGATCGTCAGGAACGACGAGATGGAAGATAGATATA TTATTCTGATGAGATTTCAAAATCAAGACTCTACTGATAAATTTTACCTGCACTTCAATGGTAGAGAATTCAACTCTTTAGAGGAAGAAGTTTGTCGCGT TCGTTTTACCATTGATGTGCAGTTCACTGGTTATAGTGGTTCACTTGAACATAGTCAGCATTCACCAACAAGCACGGCTGAGCAGTCTTCTTGTCCAGTT TGTCTAGAGAGACTAGACCAAGACATGGGTGGAATTCTTACAACCATATGCAATCATTCATTTCATTGCTCTTGCATCTCAAAATGGGCTGACTCATCTT GCCCAGTTTGTCGATATTGTCAGCAACAGCCGGAGAAATCTGTATGTTTTATATGTCAGACGTCTGAGAATCTATGGATGTGTGTAATCTGCGGTTTCGT TGGTTGTGGAAGGAATAAGGAAGGACATGCTGTAAGACATTGGAAAGAATCAGAACACTGCTATTCTCTTGAATTGGAAACACAACGAGTATGGGATTAT GCCGGTGATAATTATGTTCACAGACTAATTCAATCAAAAACTGATGGAAAGTTAGTTGAGTTGCATGCCCATTGTGCGCGTGCTGGTGATGGTTGTAGCT GTGTGAACTCAGGAATCAATGAGACTCTGTTAGGCAGCAAAGTCGAAACAATTGTTAGCGAGTATGATGAACTCCTGGCTACGCAACTTGAAAACCAGAA GCAGTATTTTGAGACTTTACTACAACAGGTGAAGGAAGAAACTGATAGAAAAAAGTCTGAAGCTGTTAAGAAGGTTGTCAATTCAAAACTACAAAAATTG CAGGCCAGGTTTGAAAAATGTACCAGAGAGAAGATGTTTCTTGATGAACTCAATGAAAATCTGCTGAAAAACAAGGAGATCTGGAAAGTGAAGATAGCCG AGATGGAGGGGAGAGAGAAAAAGGCTCTGAAGTTGAAGGATGACAAAATCCAGATCCTGGAAGTACAGCTTCAAGATTTAATGGCTCAGCTAGAGGTCGG GAAGACCCCAGCTGAGGAGGATGAAACTGCAGCAGCAGCAGCAGTTGCTGAACCTGTACAATCAAACTCTTCGGCTAAGAAGACAAATGGTAGGAAAAAG GGGTAA
AA sequence Show only first row Show all	>Lus10035023 pacid=23162601 polypeptide=Lus10035023 locus=Lus10035023.g ID=Lus10035023.BGIv1.0 annot-version=v1.0 MSSQSKFTDTSSTSSSMSIPGGSSPPDQLRQPVPAIVSVDTIETSTSTSSSTTRTQTFHFSSGNPRIEETRGIMHLFSEDSPSHLPIGRKPLVSVIGVPN HMTYADFCKFCGSFTRNILEMRIVRNDEMEDRYIILMRFQNQDSTDKFYLHFNGREFNSLEEEVCRVRFTIDVQFTGYSGSLEHSQHSPTSTAEQSSCPV CLERLDQDMGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQPEKSVCFICQTSENLWMCVICGFVGCGRNKEGHAVRHWKESEHCYSLELETQRVWDY AGDNYVHRLIQSKTDGKLVELHAHCARAGDGCSCVNSGINETLLGSKVETIVSEYDELLATQLENQKQYFETLLQQVKEETDRKKSEAVKKVVNSKLQKL QARFEKCTREKMFLDELNENLLKNKEIWKVKIAEMEGREKKALKLKDDKIQILEVQLQDLMAQLEVGKTPAEEDETAAAAAVAEPVQSNSSAKKTNGRKK G

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	0	1
AT3G30390			Transmembrane amino acid trans...		Lus10031964 [exp]	2.0	0.9528
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	2.4	0.9511
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10012555 [exp]	2.4	0.9501
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000833 [exp]	3.2	0.9353
AT1G60995			unknown protein		Lus10014638 [exp]	3.5	0.9350
AT5G41630			F-box/RNI-like superfamily pro...		Lus10011268 [exp]	5.5	0.9419
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	6.5	0.9340
AT4G27745			Yippee family putative zinc-bi...		Lus10007773 [exp]	6.6	0.9420
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	6.7	0.9354
AT5G01010			unknown protein		Lus10042743 [exp]	7.5	0.9260

Compare expression of checked genes

Lus10035023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.