Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39670 304 / 7e-105 Glycolipid transfer protein (GLTP) family protein (.1) AT2G34690 204 / 4e-66 ACD11 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034305 [exp] 322 / 3e-105 AT1G68570 681 / 0.0 Major facilitator superfamily protein (.1) Lus10021685 [exp] 262 / 1e-88 AT4G39670 175 / 2e-55 Glycolipid transfer protein (GLTP) family protein (.1) Lus10023267 [exp] 213 / 2e-69 AT2G34690 293 / 5e-102 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Lus10038537 [exp] 198 / 9e-62 AT2G34690 279 / 5e-94 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Lus10041466 [exp] 152 / 6e-42 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10003626 [exp] 47 / 5e-06 AT2G33470 242 / 3e-81 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G119600 [exp] 326 / 3e-113 AT4G39670 307 / 1e-106 Glycolipid transfer protein (GLTP) family protein (.1) Potri.006G051800 [exp] 226 / 1e-74 AT2G34690 305 / 9e-107 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Potri.016G055300 [exp] 207 / 4e-67 AT2G34690 295 / 1e-102 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [flax] [poplar] GLTP Glycolipid transfer protein (GLTP)
Representative CDS sequence Show only first row Show all	>Lus10035024 pacid=23162531 polypeptide=Lus10035024 locus=Lus10035024.g ID=Lus10035024.BGIv1.0 annot-version=v1.0 ATGAGTCTGTTTGATAGGTTCAGGTCTGCCGCCCAATCTACTCAAGCTATGAAGAGGAACCGCTCCATGTCCGATCATTTCCAAGGCGGCCAGCAGGCCG CTATCATGACCACCGCCAAATCAGAAACGGCAATCTCCGACACCGTTCAGTCTCAGACCGCCTTGTCCTTGGTGGTTGACGCTTTCGAGGAGCTGGCCCA TCCCCTCGAGAATTCCACGCGGAGAGAAGAGCTTCACGGTGATCAAGGAGGAGAAGAAGAAGAAGTTGAAGTGGAGCTCCGATTGGATTCCTTCTGTCAG GCCTGCTCTTTGGTCTCTGTTCTATTCAGCTGCCTCGGTCTCGCTTTTAAATTCGCCGAGACTGAGTACGTCGCAAAGGTGCGTGATCTGGTTGAGGCAT CGAAGACGTTTAACAATCTGCAGAGCGTTGTCGATGTAGACGTGGCGAAAGGAACGGTGAGAACTGCAGGCAGCCATTCCAGGAACTTACGCCGAGTCCG GCAAGGTCTTGATCTCATCAGAGGAATCTTCGAACAGTTCCTCGCCTCCAACGATAACTCCTTGAAGGATGCCGCAACCACAGCTTACTCCCAAATCTGC GCTCCTTATCACACCTGGGCGATAAGGACGGCGGTTTACGCCGGAATGTACACCCTTCCGACGAGGGACCAGCTTCTAGCTAGGCTGGAAGAAAATGAGC AGTCGGCGGAGAAGAACATGAGGAGGTATATACAGGCATCGCTACCGGTGATCCAGTACATCGACAGGCTATACATTTCCAGGAAAATCACATTGGATTG GTGA
AA sequence Show only first row Show all	>Lus10035024 pacid=23162531 polypeptide=Lus10035024 locus=Lus10035024.g ID=Lus10035024.BGIv1.0 annot-version=v1.0 MSLFDRFRSAAQSTQAMKRNRSMSDHFQGGQQAAIMTTAKSETAISDTVQSQTALSLVVDAFEELAHPLENSTRREELHGDQGGEEEEVEVELRLDSFCQ ACSLVSVLFSCLGLAFKFAETEYVAKVRDLVEASKTFNNLQSVVDVDVAKGTVRTAGSHSRNLRRVRQGLDLIRGIFEQFLASNDNSLKDAATTAYSQIC APYHTWAIRTAVYAGMYTLPTRDQLLARLEENEQSAEKNMRRYIQASLPVIQYIDRLYISRKITLDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39670			Glycolipid transfer protein (G...		Lus10035024 [exp]	0	1
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10012720 [exp]	2.0	0.8796
					Lus10016158 [exp]	4.2	0.8345
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030410 [exp]	4.6	0.8491
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10009129 [exp]	7.5	0.9031
AT5G52390			PAR1 protein (.1)		Lus10018204 [exp]	14.0	0.8691
					Lus10043436 [exp]	14.1	0.7668
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041829 [exp]	14.1	0.8526
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10035275 [exp]	14.8	0.7976
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10026180 [exp]	15.9	0.8655
					Lus10017959 [exp]	18.0	0.8504

Compare expression of checked genes

Lus10035024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.