Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68585 79 / 6e-20 unknown protein AT2G35730 47 / 2e-07 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021686 [exp] 155 / 2e-49 AT1G68585 92 / 5e-25 unknown protein Lus10000263 [exp] 46 / 9e-07 AT2G35730 54 / 1e-09 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G126800 [exp] 100 / 4e-28 AT1G68585 92 / 3e-25 unknown protein Potri.008G119300 [exp] 96 / 1e-26 AT1G68585 97 / 3e-27 unknown protein Potri.015G053600 [exp] 59 / 6e-12 AT1G68585 56 / 3e-11 unknown protein Potri.003G110500 [exp] 57 / 1e-11 AT2G35730 70 / 7e-17 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10035025 pacid=23162476 polypeptide=Lus10035025 locus=Lus10035025.g ID=Lus10035025.BGIv1.0 annot-version=v1.0 ATGGCTCTTGTTGTTAAGCAGCACAAGGAATTAGAGCACAACAGCAGCAGCAGTAGCAGTAAGGTTGCGGTGAAGAAGAGTAAGAAGAAGAACAAGAGAA GCATGTCTGTTCCTGGAATTGGTAGCTTGGCTTTCATTGAGTCCTTGTCCATGCCGCTTGTACAGGAGGTTGTTCTATCAGCAGATGTTCAGTGTGCTGA GTGTCAAAAGAGAGTTGCTGATGTCATCTCCAGAATGAGTGGGACAGAGTCTGTGACAGTGAATCTACTGGAGAAACAAGTGACTCTAACTTGTGCATAC CCAGCAGCTGGAAGAACCAAAGCTGCTGCTGCTTTTGCTGCAGTGTACAAGAATCCTCTAAGCGGTTTCGCATTCATCAGACGGATTCTGGGTTCTTCTT CTACGCGATAG
AA sequence Show only first row Show all	>Lus10035025 pacid=23162476 polypeptide=Lus10035025 locus=Lus10035025.g ID=Lus10035025.BGIv1.0 annot-version=v1.0 MALVVKQHKELEHNSSSSSSKVAVKKSKKKNKRSMSVPGIGSLAFIESLSMPLVQEVVLSADVQCAECQKRVADVISRMSGTESVTVNLLEKQVTLTCAY PAAGRTKAAAAFAAVYKNPLSGFAFIRRILGSSSTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68585			unknown protein		Lus10035025 [exp]	0	1
AT1G68585			unknown protein		Lus10021686 [exp]	1.4	0.9757
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10004887 [exp]	2.0	0.9772
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031265 [exp]	2.4	0.9719
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10019631 [exp]	5.9	0.9679
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10030396 [exp]	7.2	0.9680
AT1G63300			Myosin heavy chain-related pro...		Lus10001482 [exp]	7.5	0.9263
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10036626 [exp]	7.7	0.9418
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10034325 [exp]	8.1	0.9442
					Lus10017305 [exp]	8.1	0.9664
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	13.7	0.9619

Compare expression of checked genes

Lus10035025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.