Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24560 171 / 2e-50 RSY3 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3) AT2G27030 71 / 2e-16 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT1G66410 71 / 8e-16 ACAM-4, CAM4 calmodulin 4 (.1.2) AT3G43810 71 / 8e-16 CAM7 calmodulin 7 (.1) AT5G37780 71 / 8e-16 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT5G21274 71 / 8e-16 ACAM-6, CAM6 calmodulin 6 (.1) AT2G41110 71 / 8e-16 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT3G56800 71 / 8e-16 ACAM-3, CAM3 calmodulin 3 (.1) AT3G22930 63 / 1e-12 CML11 calmodulin-like 11 (.1) AT4G14640 59 / 1e-11 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034921 [exp] 234 / 1e-73 AT3G24560 676 / 0.0 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3) Lus10010386 [exp] 72 / 3e-17 AT2G27030 73 / 7e-19 calmodulin 5 (.1.2.3) Lus10006262 [exp] 70 / 6e-16 AT3G56800 79 / 6e-20 calmodulin 3 (.1) Lus10027283 [exp] 71 / 1e-15 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 71 / 1e-15 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 71 / 1e-15 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10041288 [exp] 71 / 1e-15 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10022589 [exp] 70 / 2e-15 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10021487 [exp] 70 / 2e-15 AT2G41110 255 / 1e-88 calmodulin 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081500 [exp] 176 / 4e-52 AT3G24560 694 / 0.0 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3) Potri.016G024700 [exp] 71 / 8e-16 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 71 / 8e-16 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 71 / 8e-16 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.012G041000 [exp] 70 / 1e-15 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.001G222200 [exp] 71 / 2e-15 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.015G032600 [exp] 70 / 2e-15 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.008G159300 [exp] 62 / 9e-13 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G080900 [exp] 62 / 2e-12 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.013G040300 [exp] 55 / 6e-10 AT3G22930 210 / 1e-70 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand CL0039 [flax] [poplar] HUP PF01171 [flax] [poplar] ATP_bind_3 PP-loop family
Representative CDS sequence Show only first row Show all	>Lus10035028 pacid=23162342 polypeptide=Lus10035028 locus=Lus10035028.g ID=Lus10035028.BGIv1.0 annot-version=v1.0 ATGGCTGGTCTCAAACCACACCATTCCGTTGCTTTAGGAGTATCAGGGGGCCCTGGCAGTATGGCACGGTGTTTCTTAACTGCTGCTTGGAAAACCGATA ATGTTGTTGACCGGAGTTGTGGCTATATTGATGGACTCTTGGCGGTAATCGTTGATCACGGGCTACGTGCAGAGAGCAAAGAGGAGGCAAACATTGTATC CCACAGACTCTCTAAAATGGGAACCAGATGCGAGATTGCGGAATGTAATCGGTCAGATGAAAAGCTGAAACAAGGTCATGTGCAAGAAGCTGCACGTGAG ATGAGGTATCAAAATTTCCAGAAAGTTTGCATTCAGTACCAGATTGGTTTGTTACTTATTGCTCATCATGCAGATGACCAGGACACCGACTCGGAAAAGG AGCTGAAGGAGGCATTCAGGGTGTTCGACAAGGATCAGAACGGTTTCATATCTGTTGTAGAGCTCCGTCACGTGATGACAAATCTTCACTGCTTAGTCAC CAAGTAG
AA sequence Show only first row Show all	>Lus10035028 pacid=23162342 polypeptide=Lus10035028 locus=Lus10035028.g ID=Lus10035028.BGIv1.0 annot-version=v1.0 MAGLKPHHSVALGVSGGPGSMARCFLTAAWKTDNVVDRSCGYIDGLLAVIVDHGLRAESKEEANIVSHRLSKMGTRCEIAECNRSDEKLKQGHVQEAARE MRYQNFQKVCIQYQIGLLLIAHHADDQDTDSEKELKEAFRVFDKDQNGFISVVELRHVMTNLHCLVTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	0	1
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10014828 [exp]	1.0	0.8786
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10042220 [exp]	1.7	0.8653
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10010088 [exp]	2.8	0.8636
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10005480 [exp]	3.9	0.8599
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	4.2	0.8657
AT5G59980			Polymerase/histidinol phosphat...		Lus10042842 [exp]	4.7	0.8468
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10013539 [exp]	6.0	0.8341
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	6.5	0.8545
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	8.5	0.8494
					Lus10030083 [exp]	9.2	0.8439

Compare expression of checked genes

Lus10035028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.