Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10140 90 / 4e-24 MADS FLF, AGL25, FLC FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT5G65070 89 / 3e-23 MADS FCL4, MAF4, AGL69 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G62165 87 / 7e-23 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT5G65060 84 / 9e-22 MADS FCL3, MAF3, AGL70 MADS AFFECTING FLOWERING 3, AGAMOUS-like 70, K-box region and MADS-box transcription factor family protein (.1.2) AT5G65080 84 / 9e-22 MADS AGL68, MAF5.2, MAF5 MADS AFFECTING FLOWERING 5, AGAMOUS-like 68, K-box region and MADS-box transcription factor family protein (.1.2) AT5G51860 84 / 2e-21 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT4G11880 84 / 4e-21 MADS AGL14 AGAMOUS-like 14 (.1) AT4G09960 84 / 4e-21 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT2G03710 82 / 6e-21 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G65050 82 / 7e-21 MADS MAF2, AGL31 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003123 [exp] 100 / 1e-29 AT5G10140 87 / 1e-23 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10037039 [exp] 94 / 1e-26 AT5G10140 93 / 2e-25 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10012545 [exp] 90 / 3e-25 AT3G61120 92 / 1e-24 AGAMOUS-like 13 (.1) Lus10041548 [exp] 89 / 4e-25 AT3G61120 92 / 6e-25 AGAMOUS-like 13 (.1) Lus10015766 [exp] 89 / 1e-24 AT5G10140 93 / 4e-25 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10011349 [exp] 85 / 6e-23 AT5G15800 125 / 3e-37 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10034370 [exp] 87 / 1e-22 AT1G69120 224 / 1e-73 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10005081 [exp] 87 / 5e-22 AT1G69120 223 / 1e-72 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10006716 [exp] 84 / 7e-22 AT4G11880 160 / 5e-50 AGAMOUS-like 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058200 [exp] 93 / 3e-25 AT2G03710 156 / 3e-48 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G170200 [exp] 93 / 3e-25 AT5G65050 134 / 8e-40 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3) Potri.003G169850 [exp] 93 / 1e-24 AT2G45650 143 / 5e-42 AGAMOUS-like 6 (.1) Potri.003G170000 [exp] 92 / 1e-24 AT5G65070 136 / 2e-40 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G169700 [exp] 91 / 2e-24 AT5G65070 137 / 1e-40 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.012G100200 [exp] 86 / 5e-22 AT1G26310 149 / 2e-44 CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) Potri.015G098400 [exp] 85 / 6e-22 AT4G22950 136 / 4e-40 AGAMOUS-like 19 (.1) Potri.001G328600 [exp] 85 / 7e-22 AT5G60910 136 / 1e-39 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.019G077200 [exp] 83 / 6e-21 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.014G074100 [exp] 83 / 8e-21 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10035029 pacid=23162435 polypeptide=Lus10035029 locus=Lus10035029.g ID=Lus10035029.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGAAAGGTGGAGCTGAAGCTAATTGGGGACAAAAGCAGCCGCCAAGTCACTTTCTCCAAACGCCGCAAGGGATTGTTCAAAAAGGCCGCTG ACATCTCCGTCCTCTGCGACGTCCAACTCGCTCTCGTCATATTCTCCCCCGCCGGCCGCCTCTACGAATTCTCCTCCGGCGACAGGTTAATACACCTCAT CCCCCCTCCTCATTCATTTTGCTTAATTATTTTTTCAATGACTGCGCAACTCTTAGTCTTAATGATTACCGATTCAGAGTGA
AA sequence Show only first row Show all	>Lus10035029 pacid=23162435 polypeptide=Lus10035029 locus=Lus10035029.g ID=Lus10035029.BGIv1.0 annot-version=v1.0 MGRRKVELKLIGDKSSRQVTFSKRRKGLFKKAADISVLCDVQLALVIFSPAGRLYEFSSGDRLIHLIPPPHSFCLIIFSMTAQLLVLMITDSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10035029 [exp]	0	1
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10034742 [exp]	6.3	0.8645
AT2G03200			Eukaryotic aspartyl protease f...		Lus10022917 [exp]	6.4	0.9316
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10032210 [exp]	7.7	0.9271
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10019407 [exp]	9.8	0.9238
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	11.4	0.9259
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10008608 [exp]	13.0	0.9209
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10019536 [exp]	17.7	0.9111
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	18.0	0.9143
AT1G15260			unknown protein		Lus10011448 [exp]	19.5	0.9098
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	20.1	0.9128

Compare expression of checked genes

Lus10035029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.