Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13350 409 / 1e-128 Protein kinase superfamily protein (.1.2) AT3G53640 358 / 1e-110 Protein kinase superfamily protein (.1) AT3G25840 278 / 7e-81 Protein kinase superfamily protein (.1.2) AT5G35980 110 / 2e-24 YAK1 yeast YAK1-related gene 1 (.1.2) AT4G32660 103 / 1e-23 AME3 Protein kinase superfamily protein (.1.2.3) AT3G53570 105 / 2e-23 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT1G73460 104 / 2e-22 Protein kinase superfamily protein (.1) AT1G73450 103 / 3e-22 Protein kinase superfamily protein (.1) AT3G17750 102 / 9e-22 Protein kinase superfamily protein (.1) AT2G40120 101 / 9e-22 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021688 [exp] 1244 / 0 AT3G25840 736 / 0.0 Protein kinase superfamily protein (.1.2) Lus10025301 [exp] 109 / 1e-24 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10024431 [exp] 108 / 2e-24 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10009542 [exp] 106 / 5e-23 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10020366 [exp] 106 / 6e-23 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10040203 [exp] 104 / 1e-22 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10031902 [exp] 104 / 3e-22 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10028283 [exp] 103 / 3e-22 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10042297 [exp] 103 / 6e-22 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G126900 [exp] 538 / 5e-175 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G119100 [exp] 500 / 3e-160 AT3G25840 689 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G244400 [exp] 106 / 4e-24 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G213400 [exp] 105 / 7e-24 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.013G075300 [exp] 107 / 2e-23 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.016G079900 [exp] 104 / 3e-23 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.019G043400 [exp] 105 / 8e-23 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.015G033400 [exp] 103 / 3e-22 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.012G039700 [exp] 103 / 5e-22 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.008G069000 [exp] 102 / 5e-22 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035031 pacid=23162366 polypeptide=Lus10035031 locus=Lus10035031.g ID=Lus10035031.BGIv1.0 annot-version=v1.0 ATGGCAATTGACGGCGATGCCTCTCGCCGGAAGCACAGTCGATCGCCCTCCGAGGATGAGTTGGAGAAGTCCTCTAAGCGGCGCAAGCACCGCCACCGTG ATCGTCACCACCGTAACAAGAAGCACGGTGAGGAAACCGAGCTAGCCTGCGCGGAAGATGCTCCTCATCCACCTTCTCCGGCTACTCTTCCTCTTAGTAC GGCTGACGATGACATTGAAGAAGGAGAAATTCTCGATGAGGAAGGGTCTGGTGCTGGTGATCTTAATGATGCGGAAACAGGCAAGGACATTGATGATTCT GAAAATATGGGACATAATCTTGATGAGAAGGGTAGTAGTTTCATGGCCAATTCTCGAGTTGAGGAGAAACATGTAAAGTATGCTAGTCTGAGTAGTAATA AGGCTAGAGATCAAGATAACTGGTCTTCTGAGCATGATCCACAATCTAAGATCCATGGAAGCTTAAGCTATTACGGAACAGAATCTAAGTCTCCTTGCCA TTCAAGTCTGAAGCAAAAGATCAACCATGGCACGAATGATGATGGGGAGGACTATTCAAGTGATATTAGGTGTGCTTTGGGAAATGGTCAGGATAAATAC AAAGAAAAAGCTCGATCAGAATCAAGGGACAAGCATCATGTTAAGAGAAGATCTAAATCACGTGATCAAGGGAGAGAAAGATCTCGTTCCCACAGTGGGC TAGAAGATGAGGATCACTGGAAAAGGAGGCGGCGCTATGAAAATATTGAAAAGGATTCTGGTGATGAAAGAACAAGCAGGGGCAGTAGAGATGTTCGCTC AAGTAGAGATTATGGTCGGGAGAGGGATAGAGAATCTAGCGTTAGTTATAGTAGGTACCAAGGGCGGGATGACAGATATCGCCACCGTGATGCTTATGAC AACGATAGAAGTAGGGAGAGAGAGATGGATGGGGATCGAAGGAAGGAGAAGGAAAGAGAAAGAAGCCGGGATCGGGAGACCTACGTAGATCGAAGGAAGA CTCTGGAAAGAGAGAGGAGCCAGGAGAGGGAGGGTGACAGAGATAGAAGGTGGGAGAAAAGGCATGGACGTAGGGACATGGATATGGACCGTGAAGAACG GAGGGACAGGGAATTGGATCCAAATAAGAGAAGAGAGAGAGAACATGAGAAAGGTAAGGAGCTTGATTGGAGACAGAAGGCAAGAGGCAGAGAGGATTAT ATGGAGAGGGGCAGAGGCTCAGATCAATTTATGGAAAGGGACACAAGCAAAGATGAGGAAGGCGGTAAATACCGGGAACGAGATAGGGAATATGATCGTG GGCGTGAAAAGGGTCTTGAATGGAAGACTGATAGAAGTAGTGGAAAGGTGAGAGGTGGAAAGAGTGATTCTGCAAATTTCCATGGTGCTAATAGTGATTC TTTTGAAAATGGCAGAGAAAAAGTAAAAAGGGATGAGGATGAACAGGAAGATTTTGAAGAGACGATGTCGCTTACACTAGCTGAGCAAGAGGCCGATGAG GTGAAAAGAATTAAAGAGGAGAGCAGAAGACGAAGCGAAGAAATTCTTGAGAAGTACCGGAAACAGCAGTTGCAGCAGGCAAGCGAGCCTGATATAGTGG ATGCGAAAAAAGATGTGGTGCCTGGGGAACAACATCCTGAGAAATCATTATCATCAAATGACAATGACATTAATCTTCGGACTGTGGATGGTAGCAGTGA TGGAAGAGATATGAATGTTGCTGCACCTTCAGTATCTATTGTGAAATCTCCAGTTCAAATTGTCCAGGTTTCTGATGATACGGTTTCACCTGGAGGACTT GGAGAAGGAACCCCCAAGAGTGAGAGATCAGAGGAACGTTACTGTGATGATATATTTGGAGACACCCCTACTACATTTCGCAAAGTGAGCAAGGTGAATG GTTTGCCAGTAGTACGAAGTGCTCTGCATGATAACTGGGACGATGCTGAAGGCTATTACAGCTATCGTTTTGGTGAGATTCTTGATGGACGTTATGAAAT CATTGCTGCCCATGGGAGAGGAGTCTTTTCCACTGTCGTCCGAGCAAAGGATTTGAAGGCTGGAAATGATGAACCAGAAGAGGTTGCCATTAAAATCATA CGTAACAATGAAACCATGAATAAGATCTCACAGGTTGAAGTTTCAATACTCAACAAATTAGCCGGTGCCGACTTGGAGAATAGGCGCCATTGTGTTAGGT TTCTTTCGCATTTCAAGTACAGAAATCATACTTGTTTGGTTTTTGAGTCTCTTCATATGAATCTTCGTGAGATCCTAAAAAAGTTTGGTCGCAATATTGG GCTTAAACTAACTGCTATAAGGGCATACGCCAAACAGCTTTTCATTGCGTTGAAGCATCTTAGAAATTGTGGTGTTTTGCATTGTGACATAAAGCCGGAT AATATGCTGGTGAACGAGGCAAAAAATGTGCTGAAGCTTTGCGATTTTGGCAATGCCATGTTCTCCGGAAAAAATGAAATAACCCCATACCTTGTAAGCC GCTTTTATCGCGCTCCGGAAATAAGTAAGTTGATGAACCAGAAGAGGTGGCCATTAAAATCATACGTAACAATGAAACCATGTAAGCCAAGATTGTTTTG GTCGATGATCTATTTCATTTCACTCAGGATTGCTACTGCTAACTGGAATAAGATCTCACAGGTTGAAGTTTCAATACTCAACAAATTAGCCGGTGCCGAC TTGGAGAATAGGCGCCATTGTGTTAGGTTTCTTTCACATTTCAAGTACAGAAATCATACTTGTTTGGTTTTTGAGTCTCTTCATATGAATCTTCGTGAGA TCCTAAAAAAGTTTGGTCGCAATATTGGACTTAAACTAACTGCTATAAGGGCATATGCCAAGCAGCTTTTCATTGCGTTGAAGCATCTTAGAAATTGTGG TGTTTTGCATTGTGACATAAAGCCGGATAATATGCTGGTGAACGAAGCAAAAAATGTGCTGAAGCTTTGCGACTTTGGCAATGCCATGTTCTCCGGAAAA AATGAAATAACCCCATACCTTGTAAGCCGCTTTTATCGCGCTCCTGAAATAATTCTTGGTTTGCCATATGATCACCCTATGGATATTGGTCCGTTGGTTG CTGTTTATATGAGCTTTATACCGGAAAAGTTCTTTTTCCTGGTTCAACCAATAATGATATGTTGCGACTGCACATGGAACTGA
AA sequence Show only first row Show all	>Lus10035031 pacid=23162366 polypeptide=Lus10035031 locus=Lus10035031.g ID=Lus10035031.BGIv1.0 annot-version=v1.0 MAIDGDASRRKHSRSPSEDELEKSSKRRKHRHRDRHHRNKKHGEETELACAEDAPHPPSPATLPLSTADDDIEEGEILDEEGSGAGDLNDAETGKDIDDS ENMGHNLDEKGSSFMANSRVEEKHVKYASLSSNKARDQDNWSSEHDPQSKIHGSLSYYGTESKSPCHSSLKQKINHGTNDDGEDYSSDIRCALGNGQDKY KEKARSESRDKHHVKRRSKSRDQGRERSRSHSGLEDEDHWKRRRRYENIEKDSGDERTSRGSRDVRSSRDYGRERDRESSVSYSRYQGRDDRYRHRDAYD NDRSREREMDGDRRKEKERERSRDRETYVDRRKTLERERSQEREGDRDRRWEKRHGRRDMDMDREERRDRELDPNKRREREHEKGKELDWRQKARGREDY MERGRGSDQFMERDTSKDEEGGKYRERDREYDRGREKGLEWKTDRSSGKVRGGKSDSANFHGANSDSFENGREKVKRDEDEQEDFEETMSLTLAEQEADE VKRIKEESRRRSEEILEKYRKQQLQQASEPDIVDAKKDVVPGEQHPEKSLSSNDNDINLRTVDGSSDGRDMNVAAPSVSIVKSPVQIVQVSDDTVSPGGL GEGTPKSERSEERYCDDIFGDTPTTFRKVSKVNGLPVVRSALHDNWDDAEGYYSYRFGEILDGRYEIIAAHGRGVFSTVVRAKDLKAGNDEPEEVAIKII RNNETMNKISQVEVSILNKLAGADLENRRHCVRFLSHFKYRNHTCLVFESLHMNLREILKKFGRNIGLKLTAIRAYAKQLFIALKHLRNCGVLHCDIKPD NMLVNEAKNVLKLCDFGNAMFSGKNEITPYLVSRFYRAPEISKLMNQKRWPLKSYVTMKPCKPRLFWSMIYFISLRIATANWNKISQVEVSILNKLAGAD LENRRHCVRFLSHFKYRNHTCLVFESLHMNLREILKKFGRNIGLKLTAIRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFSGK NEITPYLVSRFYRAPEIILGLPYDHPMDIGPLVAVYMSFIPEKFFFLVQPIMICCDCTWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25840			Protein kinase superfamily pro...		Lus10035031 [exp]	0	1
AT3G25840			Protein kinase superfamily pro...		Lus10021688 [exp]	1.0	0.8922
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	11.9	0.6637
AT1G30320			Remorin family protein (.1)		Lus10038521 [exp]	13.8	0.6149
AT3G04160			unknown protein		Lus10042519 [exp]	14.4	0.6617
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022651 [exp]	25.5	0.6452
AT5G03450			Transducin/WD40 repeat-like su...		Lus10026534 [exp]	26.0	0.6485
AT3G56720			unknown protein		Lus10027280 [exp]	39.2	0.6079
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10036312 [exp]	46.9	0.5824
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10019710 [exp]	61.6	0.5797
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10005836 [exp]	69.9	0.5921

Compare expression of checked genes

Lus10035031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.