Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25840 166 / 1e-47 Protein kinase superfamily protein (.1.2) AT3G53640 135 / 6e-37 Protein kinase superfamily protein (.1) AT1G13350 134 / 2e-36 Protein kinase superfamily protein (.1.2) AT3G19100 44 / 3e-05 Protein kinase superfamily protein (.1) AT4G04740 43 / 7e-05 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT1G76040 42 / 0.0001 CPK29 calcium-dependent protein kinase 29 (.1.2) AT4G01370 42 / 0.0001 ATMPK4 MAP kinase 4 (.1) AT1G01560 42 / 0.0002 ATMPK11 MAP kinase 11 (.1.2) AT4G04720 42 / 0.0002 CPK21 calcium-dependent protein kinase 21 (.1) AT4G21940 41 / 0.0003 CPK15 calcium-dependent protein kinase 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021688 [exp] 188 / 4e-55 AT3G25840 736 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001146 [exp] 43 / 8e-05 AT1G50700 400 / 5e-139 calcium-dependent protein kinase 33 (.1) Lus10020046 [exp] 43 / 9e-05 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10006777 [exp] 42 / 0.0001 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10014283 [exp] 42 / 0.0001 AT2G18170 611 / 0.0 MAP kinase 7 (.1) Lus10002075 [exp] 42 / 0.0001 AT4G04720 536 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10028765 [exp] 41 / 0.0003 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 41 / 0.0003 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10024668 [exp] 40 / 0.0005 AT4G01370 657 / 0.0 MAP kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G119100 [exp] 160 / 2e-45 AT3G25840 689 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G126900 [exp] 159 / 1e-44 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G119500 [exp] 43 / 7e-05 AT2G18170 662 / 0.0 MAP kinase 7 (.1) Potri.016G054600 [exp] 42 / 0.0001 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.002G162500 [exp] 41 / 0.0003 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.014G088500 [exp] 40 / 0.0004 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.005G245000 [exp] 40 / 0.0007 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.006G052900 [exp] 40 / 0.001 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.009G069200 [exp] 40 / 0.001 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035032 pacid=23162428 polypeptide=Lus10035032 locus=Lus10035032.g ID=Lus10035032.BGIv1.0 annot-version=v1.0 ATGCTTAAGAAGGGTGCGTTTGTTGATCAACATTTCGACCATGATTTGAATTTTTATGCTACCGAACAAGATTCTGTGAGTGATAAGATTATTAAGAGGA TGATTGTAAATGTAAAGCCCAAGGATATTGGGTCAGTTGTTAAAGGCTCTCCAGGAGAGGATCCAAAGATGTTAGCCAACTTCAAAGACCTTTTGGAAAA AGTTTTTATCTTGGATCCTGAGAAGAGAATGACGGTTTCTCAGGCTTTAAGCCATCCATTCATCACTGGCAAGAGAAAAAATGTATCACTGGCAACTGCA CCAGTGTTGTCGCAATCTCCATGGTTTAAATGCATAAAGCCACGAAGTAGAAGTATTAAGTGTAATGGGGCAATCAGGATTTCATATGTTTTCTTTTGTC TTCCTACTGTCCTTGTTCTTGTTCTAACCGACCTGCATACATCTGATACATGGTCTATTGTCAATCTGGAGGCTTGCTCTGGAGAGTCTGCTGCTGAAGC CTATAGTAATCTGGGCATACTCTATCATACTGAAACTCTTGTAAGTATCACTTCTTTCCCCGCAGAGTTCGTTTGTGGGTATTTCGACCTGCATATTCAA GTCACGTTGCATGTGAAGATACTATAA
AA sequence Show only first row Show all	>Lus10035032 pacid=23162428 polypeptide=Lus10035032 locus=Lus10035032.g ID=Lus10035032.BGIv1.0 annot-version=v1.0 MLKKGAFVDQHFDHDLNFYATEQDSVSDKIIKRMIVNVKPKDIGSVVKGSPGEDPKMLANFKDLLEKVFILDPEKRMTVSQALSHPFITGKRKNVSLATA PVLSQSPWFKCIKPRSRSIKCNGAIRISYVFFCLPTVLVLVLTDLHTSDTWSIVNLEACSGESAAEAYSNLGILYHTETLVSITSFPAEFVCGYFDLHIQ VTLHVKIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25840			Protein kinase superfamily pro...		Lus10035032 [exp]	0	1
AT5G40600		EMB1875	unknown protein		Lus10003647 [exp]	1.4	0.9129
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	1.4	0.9234
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10025465 [exp]	1.7	0.9035
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	2.8	0.8914
AT5G47900			Protein of unknown function (D...		Lus10036333 [exp]	3.2	0.8889
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	3.5	0.8838
AT4G02030			Vps51/Vps67 family (components...		Lus10036541 [exp]	4.5	0.8422
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	4.6	0.8809
AT4G00290			Mechanosensitive ion channel p...		Lus10005121 [exp]	6.8	0.8388
					Lus10041093 [exp]	6.9	0.8804

Compare expression of checked genes

Lus10035032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.