Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32000 1363 / 0 DNA topoisomerase, type IA, core (.1.2) AT5G63920 404 / 1e-126 TOP3A, AtTOP3alpha topoisomerase 3alpha (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021692 [exp] 1345 / 0 AT2G32000 1071 / 0.0 DNA topoisomerase, type IA, core (.1.2) Lus10004959 [exp] 326 / 4e-98 AT5G63920 1136 / 0.0 topoisomerase 3alpha (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148800 [exp] 1454 / 0 AT2G32000 1392 / 0.0 DNA topoisomerase, type IA, core (.1.2) Potri.005G067100 [exp] 417 / 1e-131 AT5G63920 1389 / 0.0 topoisomerase 3alpha (.1) Potri.006G279700 [exp] 68 / 2e-11 AT4G31210 1234 / 0.0 DNA topoisomerase, type IA, core (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0413 [flax] [poplar] Toprim-like PF01751 [flax] [poplar] Toprim Toprim domain CL0413 [flax] [poplar] PF01131 [flax] [poplar] Topoisom_bac DNA topoisomerase
Representative CDS sequence Show only first row Show all	>Lus10035035 pacid=23162473 polypeptide=Lus10035035 locus=Lus10035035.g ID=Lus10035035.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCCGGTGTTCTTATGGTTGCAGAGAAACCAAGCATCGCTTCCTCCATCGCTTCCGTACTCTCCCATGGCAAAATGTTCACAAGGAAAGGCA GCACTGACGTCCATGAATTTGATGCCATGTTCCTTGGCTTCCCTGCCCATTACAAAGTCACTTCAGTGATTGGCCACGTTTTCAGTGTAGATTTCCCCGA GAAATATCAGAATTGGTCTACCACTGATCCTTTGGATCTTTTCCAAGCTCCCATTAGGAAGAGTGAATCAAATCCCAAGGCTCATATTAGACGCCACTTG AGTCAAGAGGCTCGCGGCTGTACTCACTTGGTGCTGTGGTTAGATTGTGATCGTGAAGGAGAAAACATATGCTTTGAAGTTATTGAGTGTGCCGGCTTTC AGATAAATGATGGTAGACGAAAGATTCATCGTGCACGGTTTTCTTCAGTCACTGAGAAAGACATTTCAAAGGCAATTGATAACCTTGTTGAACCAAACAA AGATGAGGCATTGGCTGTTGATGCTCGGCAAGAGATAGATTTGAAAGTTGGAGTGGCATTTACACGTTTCCAAACCGGTTATTTCCAGGGAAAATATGGA AATCTCGACTCCAGAGTAATCTCTTATGGACCATGCCAAACCCCTACTCTTGGATTCTGTGTTCAGCGGTATCTGCAAATTACAACCTTTAAGGCTGAAA AGTACTGGGCCTTGCACCCTTATATAGTAACGGATGGTTTTGAGCTGCAGCTGGAGTGGGAACGCCAGAGATTGTTTGATATGGATGTTGCTGTTATGTT TCAAAAGCTTGTCATGCAAGATGAAGTATTTGTAGTCACTGGAATAACGGAAGAAAATGAAACCAAAAGTCGTCCACATGGCCTAAACACGGTCAACCTT CTTAAGGTTGCTTCAAGTGCATTAGGCTTTGGTCCTCATCAAGCAATGCAGCTAGCTGAACGCCTATATACTCAAGGATTCATCAGTTACCCACGTACCG AGAGTACAGCCTACCCCTCCTCGTTTGACTTCAGAAACACACTCGGAGAACTAGTGAAAAATCCAACTTTGGGTGAATATGCACGCAGCCTGCTTTCTGG AGGCTATCAGAAGCCAAAATCTGGGACAGATGTAGGTGATCATCCTCCTATTACTCCCATGCGATCAGCCAGTGAGGATATGATTGGTGTTGATGCTTGG AGACTATATCAATACATCTGTCAACATTTTCTAGGGACTGTATCACCTGACTGCAAGTTTGTAAGGACAAAGATACAATTTTCAGCTGGTGGAGAACTCT TTCATTGTGTTGGGAGGCGTGTCAGAGTTCAAGGGTTTACTTCTATCATGCCTTGGTTGGCTGTTAGTGAGAAAAATATTCCACTGTTTGCTAAAGGGCA GAAAATCAGAATGTCAAAAGTGGAGTTATTTGAGGGGAAAACTGCTCCTCCAGATTATCTTAGCGAGAGTGAGCTGATTTCATTGATGGAGAAGTATGGT ATAGGAACAGATGCATCAATACCTGTCCACATTAACAACATCTGTGAACGCAACTACGTGCAGGTGCAAGCTGGGAGGAAACTGGTTCCAACTGCTTTAG GTATCACCTTAATAAGAGGCTACCAACGTATTGATCCAGATCTTTGTTTGCCCGACATCCGGAGTTTCATCGAGCAGCAGATTATGCTTGTTGCCAAGGG CCAAGCTGACCATTCCCGTGTTGTGCTGCATGTATTGCAACAATTCAAGCAAAAGTTTGCTTACTTTGTTAAGCAGATAGACAACATGGATGCATTGTTT GAAGCACAGTTCTCCCCGCTTGTTGATTCAGGGAAAGCACTTAGCAAATGCGGTAAATGCCTGAGGTACATGAAGTACATTTCCATCCAACCATCTCGCC TATATTGCGGTACTTGTGAGGAGGTGTATTATGTTCCTCAGAAGGGTACAATCAAGTTGTACAAAGAGCTGACTTGCCCGCTGGACAACTTCGAGCTGTT GATATTCTCCATGGCTGGTCCAGAAGGCAAGTCATTCCCTCTCTGTCCGTACTGCTACAACAACCCTCCTTTTGAAGGAATAGACACACTCTTTGGAGCT ACCAAGGCAGCTGCTGCTGATGGTAACAACAGTCGAGATCGAAAGTTAGGAAAAGGGGCAGGAATGCCATGCTTCCTTTGTCCACACCCAACTTGCAGGC ACTCTGTAATAGCACAAGGAGTGTGTGCTTGCCCCGAATGCAGCGGGACTTTGGTGCTCGACCCGGTAAGCGCTCCCAAATGGAGACTATACTGCAACAT GTGCAACTGCCTTGTGTTGCTTCCACAGGGAGCTCACAAGATCAGCACCACCGACGAACGGTGCGCTGAATGCGACTCGAAGATCATCGAAGTTGACTTC AACAAGAACTCCACACCTTTGAAAGATGGTAGTACGTTGCATAGAGGGTGCATTCTGTGTGATGATCTTCTTCACTCGGTCGTGGAGGTTAAGCATGGGA AGTCGTTCTTCAAGCGTAGCGGAGGAGCTAGGGGACGAGGAGGCTCGTGGCGAAGGGGAGGAAGAGGGAGGGGTAATTCCGGGAAAAGGGTTGATCCCAA AATGAGCTTCTCAGAGTTCTGA
AA sequence Show only first row Show all	>Lus10035035 pacid=23162473 polypeptide=Lus10035035 locus=Lus10035035.g ID=Lus10035035.BGIv1.0 annot-version=v1.0 MAPPGVLMVAEKPSIASSIASVLSHGKMFTRKGSTDVHEFDAMFLGFPAHYKVTSVIGHVFSVDFPEKYQNWSTTDPLDLFQAPIRKSESNPKAHIRRHL SQEARGCTHLVLWLDCDREGENICFEVIECAGFQINDGRRKIHRARFSSVTEKDISKAIDNLVEPNKDEALAVDARQEIDLKVGVAFTRFQTGYFQGKYG NLDSRVISYGPCQTPTLGFCVQRYLQITTFKAEKYWALHPYIVTDGFELQLEWERQRLFDMDVAVMFQKLVMQDEVFVVTGITEENETKSRPHGLNTVNL LKVASSALGFGPHQAMQLAERLYTQGFISYPRTESTAYPSSFDFRNTLGELVKNPTLGEYARSLLSGGYQKPKSGTDVGDHPPITPMRSASEDMIGVDAW RLYQYICQHFLGTVSPDCKFVRTKIQFSAGGELFHCVGRRVRVQGFTSIMPWLAVSEKNIPLFAKGQKIRMSKVELFEGKTAPPDYLSESELISLMEKYG IGTDASIPVHINNICERNYVQVQAGRKLVPTALGITLIRGYQRIDPDLCLPDIRSFIEQQIMLVAKGQADHSRVVLHVLQQFKQKFAYFVKQIDNMDALF EAQFSPLVDSGKALSKCGKCLRYMKYISIQPSRLYCGTCEEVYYVPQKGTIKLYKELTCPLDNFELLIFSMAGPEGKSFPLCPYCYNNPPFEGIDTLFGA TKAAAADGNNSRDRKLGKGAGMPCFLCPHPTCRHSVIAQGVCACPECSGTLVLDPVSAPKWRLYCNMCNCLVLLPQGAHKISTTDERCAECDSKIIEVDF NKNSTPLKDGSTLHRGCILCDDLLHSVVEVKHGKSFFKRSGGARGRGGSWRRGGRGRGNSGKRVDPKMSFSEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32000			DNA topoisomerase, type IA, co...		Lus10035035 [exp]	0	1
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10013726 [exp]	6.2	0.7889
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10037338 [exp]	6.5	0.7701
AT5G50340			ATP-dependent peptidases;nucle...		Lus10038258 [exp]	10.7	0.7704
AT4G33140			Haloacid dehalogenase-like hyd...		Lus10027652 [exp]	10.8	0.7448
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10013536 [exp]	11.7	0.7532
AT2G14050		MCM9	minichromosome maintenance 9 (...		Lus10023780 [exp]	14.3	0.8303
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	15.0	0.7878
AT3G62310			RNA helicase family protein (....		Lus10005261 [exp]	17.7	0.8234
AT4G10050			esterase/lipase/thioesterase f...		Lus10006170 [exp]	19.6	0.8074
AT5G25060			RNA recognition motif (RRM)-co...		Lus10042420 [exp]	22.4	0.7934

Compare expression of checked genes

Lus10035035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.