Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68590 167 / 2e-53 Ribosomal protein PSRP-3/Ycf65 (.1.2) AT5G15760 143 / 9e-44 Ribosomal protein PSRP-3/Ycf65 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021693 [exp] 296 / 4e-104 AT1G68590 178 / 9e-58 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10041469 [exp] 187 / 4e-61 AT1G68590 175 / 2e-56 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10034302 [exp] 186 / 2e-60 AT1G68590 173 / 2e-55 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10033551 [exp] 113 / 4e-32 AT5G15760 115 / 3e-33 Ribosomal protein PSRP-3/Ycf65 (.1) Lus10017590 [exp] 111 / 2e-31 AT5G15760 116 / 3e-33 Ribosomal protein PSRP-3/Ycf65 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127300 [exp] 180 / 4e-58 AT1G68590 188 / 2e-61 Ribosomal protein PSRP-3/Ycf65 (.1.2) Potri.008G118700 [exp] 178 / 2e-57 AT1G68590 187 / 4e-61 Ribosomal protein PSRP-3/Ycf65 (.1.2) Potri.004G101000 [exp] 129 / 2e-38 AT1G68590 136 / 3e-41 Ribosomal protein PSRP-3/Ycf65 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04839 [flax] [poplar] PSRP-3_Ycf65 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
Representative CDS sequence Show only first row Show all	>Lus10035036 pacid=23162411 polypeptide=Lus10035036 locus=Lus10035036.g ID=Lus10035036.BGIv1.0 annot-version=v1.0 ATGTTGACCACTGCACTTCAATCTTGCGCCACCAATGCCGCTATCCCTTCCTGCGGCTCTCTCCTTTCCCAAACTCCCAAAACTCCCTCTCTGAAAAGCC ATCATTTGACCACTCGGAACATCAACCAGCCATGTCCACCAAACCTGCGCTTCTCCGCATTCGCCGCACCCGAAGCGGTGGTGGCTGCTATGTCGCCGGA CGTCGAACAAGATGCACAATCTTTCACTGACGAAATGAACGAAGTGACTGTGAAGCAATTCGGGAAGCCAAGGCTGGTGCTCAAGTTCATATGGATGGAG AAGAACATAGGGTTGGGTCTTGATCAGGTCATTCCAGGACATGGTACGGTTCCTTTGAGCCCTTACTTCTTTTGGCCCAGAATTGATGCTTGGGAAGAGC TCAAGACCACTCTAGAGAGCAAGCCTTGGATTTCCCAGAAGAAGATGATCATTCTCCTCAATCAGGCTACTGACATTATCAACTTGTGGCAGCAGAGTGG CGGCAATCTCACTGGTTGA
AA sequence Show only first row Show all	>Lus10035036 pacid=23162411 polypeptide=Lus10035036 locus=Lus10035036.g ID=Lus10035036.BGIv1.0 annot-version=v1.0 MLTTALQSCATNAAIPSCGSLLSQTPKTPSLKSHHLTTRNINQPCPPNLRFSAFAAPEAVVAAMSPDVEQDAQSFTDEMNEVTVKQFGKPRLVLKFIWME KNIGLGLDQVIPGHGTVPLSPYFFWPRIDAWEELKTTLESKPWISQKKMIILLNQATDIINLWQQSGGNLTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10035036 [exp]	0	1
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10037372 [exp]	2.4	0.9718
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10041346 [exp]	2.8	0.9746
AT4G29590			S-adenosyl-L-methionine-depend...		Lus10040550 [exp]	3.9	0.9630
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10018192 [exp]	4.2	0.9620
AT5G53490			Tetratricopeptide repeat (TPR)...		Lus10007788 [exp]	4.5	0.9612
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Lus10007262 [exp]	4.5	0.9634
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Lus10030990 [exp]	4.8	0.9475
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	5.2	0.9712
AT2G33180			unknown protein		Lus10023686 [exp]	6.5	0.9553
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	7.0	0.9626

Compare expression of checked genes

Lus10035036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.