Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25480 268 / 9e-84 Aluminium activated malate transporter family protein (.1) AT1G68600 261 / 2e-81 Aluminium activated malate transporter family protein (.1) AT2G17470 258 / 4e-80 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT3G18440 248 / 2e-75 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G18420 243 / 5e-74 Aluminium activated malate transporter family protein (.1) AT5G46610 101 / 7e-23 Aluminium activated malate transporter family protein (.1.2.3) AT5G46600 92 / 1e-19 Aluminium activated malate transporter family protein (.1) AT4G17970 87 / 6e-18 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT1G08430 72 / 2e-13 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT2G27240 68 / 4e-12 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021694 [exp] 458 / 2e-157 AT1G25480 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10027657 [exp] 250 / 2e-76 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10034301 [exp] 223 / 3e-66 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10039925 [exp] 197 / 4e-59 AT3G18440 290 / 5e-94 aluminum-activated malate transporter 9 (.1) Lus10024710 [exp] 108 / 2e-25 AT3G18440 296 / 1e-94 aluminum-activated malate transporter 9 (.1) Lus10039926 [exp] 99 / 9e-23 AT3G18440 403 / 6e-138 aluminum-activated malate transporter 9 (.1) Lus10004556 [exp] 98 / 1e-21 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 94 / 2e-20 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 92 / 2e-19 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G118600 [exp] 289 / 8e-92 AT1G25480 646 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.015G053400 [exp] 263 / 2e-81 AT3G18440 681 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.010G127400 [exp] 244 / 1e-74 AT3G18440 588 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.003G134100 [exp] 125 / 3e-31 AT3G18440 306 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.001G097300 [exp] 124 / 2e-30 AT3G18440 307 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.001G144300 [exp] 98 / 1e-21 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.002G174600 [exp] 86 / 6e-18 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 81 / 3e-16 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 80 / 9e-16 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.001G085900 [exp] 79 / 2e-15 AT4G00910 508 / 9e-178 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10035037 pacid=23162362 polypeptide=Lus10035037 locus=Lus10035037.g ID=Lus10035037.BGIv1.0 annot-version=v1.0 ATGGCAACCATGAGAATAGAGTCGTTGGAGGAGAATCTGGAGGAGCAGGGTAAAGAGAGGCTGCTGCAGTCTCGAAAAGGGTACTCCGAATTCGGGTTCA ACAGCTCCCAAGAGGATGGAAACTCTGCATCAGAGAGAGAAGGCGACAATGGTGACGAAGAAGAAGGAAGAGGATGCTGTTGGTCTCTCTGCCATGGGAT CGTCACATTCTGCCAGATCAGATCCTCGGAGCTATACAATATGGGGAGATCAGATCCTCGAAAGATCTTCTTCGCAATCAAAATGGGGCTCTCCCTGGCT ACTGTCTCAATGCTCATGATCTTCAGGGAACATTTGGAGGGAGCCAGCCAGTACTCCATTTGGGCTATTATCACTGTCGTCGTCGTGTTCGAATTCACCG TCGGTGGGACACTAAGCAAAGGATTAAACAGAGGATTAGGAACATTTTCTGCAGGGGCACTTGCTCTTGGAAATGCAGAGCTCTCTGTTTTCTTTGGCAA ATATCAAGAAGTCTTTATCATACTCAGTATTTTCATTGCAGTCTCTGATGACCCTGTTTACAATGGCTACAGATCTGCTGTTCAATCCACTTCTCAAGAG GATACCTTGTTAGGGTTTGCTGTATGGGAGCCACCACATGGTCGTTACGGGTTCTTCTGTTATCCATGGCAAAATTATGTGAAAGTGAGTGGAGCTCTGA GGCATTGTGCTCTCATGGTGATGGCTATGCATGGATGCATTCTTTCTGAAATTCAGGCACCAGCAGAAAAGAGACGCGTATTTGCCAGAGAGCTGGAAGC AGTAGGCAATGAAGGAGCCAAAGTACTACGTGAAATCGCAACAAAACTCGAAAAACTGGAAAAGCTAAGGCCCACTAGAGACGAATTACTACTCAAAGTG CAACAAGCAGCTGAAGAATTGCAGATGAAAGTCGACCAAAAATCATACCTTTTGGTGAACTCCGAAAGCTGGGCGAAGAAAAAACAACCACACTACCAAA CCGAAACAGACCCTGATCTGAATAAAGCAGAGGATCAAGACACTAAAGTCGCCGTAACCAACGACATTAACAAGAGCGCCAGCAGCAGCTTCTACAACAA CCAGTGCAGTTGGGCGTCTTCCGAGAGCTTCCAGCCGCCGCCGTTGTCGTGGCCACGTGTCTCGTTTCTCGGAGGCGAGGCTCCCAATTTGGAGCAGGAG TCGAAGGTTTACGAGAGCGCTAGCTCGCTTTCGTTGGCCACATTTGCTTCGTTGCTGATTGAGTTTGTTGCTAGGCTTCAGAATCTTGTGGATGAGTATC AGGAGCTTGGTGAGAAGGCGAGGTTTGAGGGTTCTGATCAATTTGGTGGGCGGGAATCTGTTGGGTTCTGGACTAGGCTTAAGAGATGTTTTCTGCTGTA G
AA sequence Show only first row Show all	>Lus10035037 pacid=23162362 polypeptide=Lus10035037 locus=Lus10035037.g ID=Lus10035037.BGIv1.0 annot-version=v1.0 MATMRIESLEENLEEQGKERLLQSRKGYSEFGFNSSQEDGNSASEREGDNGDEEEGRGCCWSLCHGIVTFCQIRSSELYNMGRSDPRKIFFAIKMGLSLA TVSMLMIFREHLEGASQYSIWAIITVVVVFEFTVGGTLSKGLNRGLGTFSAGALALGNAELSVFFGKYQEVFIILSIFIAVSDDPVYNGYRSAVQSTSQE DTLLGFAVWEPPHGRYGFFCYPWQNYVKVSGALRHCALMVMAMHGCILSEIQAPAEKRRVFARELEAVGNEGAKVLREIATKLEKLEKLRPTRDELLLKV QQAAEELQMKVDQKSYLLVNSESWAKKKQPHYQTETDPDLNKAEDQDTKVAVTNDINKSASSSFYNNQCSWASSESFQPPPLSWPRVSFLGGEAPNLEQE SKVYESASSLSLATFASLLIEFVARLQNLVDEYQELGEKARFEGSDQFGGRESVGFWTRLKRCFLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25480			Aluminium activated malate tra...		Lus10035037 [exp]	0	1
AT1G69550			disease resistance protein (TI...		Lus10005376 [exp]	1.7	0.8968
					Lus10021281 [exp]	4.4	0.8100
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10030347 [exp]	4.5	0.8017
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024717 [exp]	4.9	0.8546
AT3G05170			Phosphoglycerate mutase family...		Lus10032291 [exp]	5.7	0.8842
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	6.3	0.8554
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10028822 [exp]	7.0	0.8462
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015751 [exp]	8.0	0.8912
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002305 [exp]	8.7	0.8830
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10005447 [exp]	13.0	0.8208

Compare expression of checked genes

Lus10035037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.