Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25520 322 / 2e-109 Uncharacterized protein family (UPF0016) (.1) AT1G68650 318 / 3e-108 Uncharacterized protein family (UPF0016) (.1) AT5G36290 162 / 1e-46 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT4G13590 130 / 6e-34 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G64150 101 / 1e-23 Uncharacterized protein family (UPF0016) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034293 [exp] 382 / 2e-133 AT1G25520 349 / 2e-123 Uncharacterized protein family (UPF0016) (.1) Lus10041478 [exp] 360 / 1e-124 AT1G25520 327 / 1e-114 Uncharacterized protein family (UPF0016) (.1) Lus10021697 [exp] 184 / 2e-55 AT1G25520 94 / 5e-23 Uncharacterized protein family (UPF0016) (.1) Lus10026995 [exp] 170 / 1e-49 AT5G36290 401 / 5e-142 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10020195 [exp] 145 / 3e-41 AT5G36290 321 / 5e-112 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10011763 [exp] 133 / 4e-35 AT4G13590 429 / 6e-151 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10023685 [exp] 132 / 9e-35 AT4G13590 443 / 1e-156 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10032330 [exp] 93 / 1e-20 AT1G64150 333 / 8e-113 Uncharacterized protein family (UPF0016) (.1) Lus10024713 [exp] 90 / 2e-19 AT1G64150 322 / 5e-108 Uncharacterized protein family (UPF0016) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117900 [exp] 350 / 2e-120 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.010G128400 [exp] 350 / 2e-120 AT1G25520 335 / 1e-117 Uncharacterized protein family (UPF0016) (.1) Potri.019G116100 [exp] 346 / 4e-119 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.019G053400 [exp] 168 / 5e-49 AT5G36290 328 / 4e-113 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.013G086700 [exp] 166 / 2e-48 AT5G36290 322 / 8e-111 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.001G053600 [exp] 134 / 3e-35 AT4G13590 417 / 5e-146 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G174600 [exp] 129 / 1e-33 AT4G13590 369 / 2e-127 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G134300 [exp] 112 / 3e-27 AT1G64150 344 / 6e-117 Uncharacterized protein family (UPF0016) (.1) Potri.009G097500 [exp] 60 / 1e-10 ND / Potri.010G127900 [exp] 45 / 1e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF01169 [flax] [poplar] UPF0016 Uncharacterized protein family UPF0016
Representative CDS sequence Show only first row Show all	>Lus10035040 pacid=23162392 polypeptide=Lus10035040 locus=Lus10035040.g ID=Lus10035040.BGIv1.0 annot-version=v1.0 ATGATGAACAGCAGAGACTGTAGCAACGAGGATGATGATTTCTACGCGGATATTAGAAGGCAGATTATGCTTCTGACGGGTGATGATGAGTCGGATCGTA ATCGGAAGGCTTTGCCATGCAGTGGCAGAGTAAGGCAGGTGGTTCCGGCTGCGGGAAGCGATGGATTTGGCGATTATTTGAGTTCATGTTCGGACTCAAC GCCGGATTGGCTTGTGAAGCTGTGGAGAAGTAGTAGTAGTAGTAGTGTTAAGATCAATTGCAGTGGGAGTTCAAATGTGGTGGGAACTGGAGTTTTCATC CCTCAGATCGTTAAATGCAGAGGAAGAAACCGACCCACTGGTCCTTGGTGCTCACCTGTACCAACGAATAGAATAGAAAAAGACGAAATCTTTCTACCTG CGTGCCGTTTATTCAACCAACACTCGGTCGATTCGAGTTGGTTTGACTCAGTCCCGGGAACTGCACCGCCACAGTCTCTTCTCCCGCCGGCGCGCTTCTC TGCGCCAGCTGACGAAGTCAACTCTCGTCATTTTGCGGCAAGGAGATTAATCCTTCATTCTGTCACTCACCCGAGTTACAATGAGCTCAGTCGCGCAGTG ATGAATTGGTTCTTGAATCAGGGTTTTACTAAGTCACTGGCGATGACTATTTTGTCTGAGATTGGCGACAAGACCTTCATCGCTGCCGCGATCTTGGCGA TGCGCCATCCAAGGAGGCTTGTTTTGTCCGGCTGCCTGAGCGCATTGATTGTCATGACTATCCTTTCTGCTGTTGTTGGCTGGGCTGCTCCAAATCTGCT CTCTCGTACATGGACCCATCATATAACTACAGTATTATTTTTTGGATTTGGCCTTTGGTCTTTATGGGATGGAGTCAAAGGAGACGGGGAGTCTGAAGAA TTGGCGGAAGTTGAAGCAAAATTGGATGCTGACTGGAAATCTAGTGCTGGAACTACCAAGGAAGATAGCAAGGCTGATGACGATTCAAAAAAGAAATCAC GGCCATTTCTTGCACCGTTCTTCTCACCAATATTGTTGAAGGCATTCTCCATTACATTCTTCGGTGAATGGGGTGACAAGAGTCAGCTTGCTACTATCGG TTTGGCTGCTGATGAGAACCCATTTGGTGTTGTTCTTGGTGGAATCGTAGGACAAGCTTTGTGTACAACTGCTGCTGTTTTAGGAGGAAAGAGCTTGGCG TCGCAAATATCTGAGAAAATGGTTGCCCTCTCAGGTGGAATTCTTTTTATAGTCTTCGGCGTCCAATCCTTCCTTTCAGACGTCAACTAA
AA sequence Show only first row Show all	>Lus10035040 pacid=23162392 polypeptide=Lus10035040 locus=Lus10035040.g ID=Lus10035040.BGIv1.0 annot-version=v1.0 MMNSRDCSNEDDDFYADIRRQIMLLTGDDESDRNRKALPCSGRVRQVVPAAGSDGFGDYLSSCSDSTPDWLVKLWRSSSSSSVKINCSGSSNVVGTGVFI PQIVKCRGRNRPTGPWCSPVPTNRIEKDEIFLPACRLFNQHSVDSSWFDSVPGTAPPQSLLPPARFSAPADEVNSRHFAARRLILHSVTHPSYNELSRAV MNWFLNQGFTKSLAMTILSEIGDKTFIAAAILAMRHPRRLVLSGCLSALIVMTILSAVVGWAAPNLLSRTWTHHITTVLFFGFGLWSLWDGVKGDGESEE LAEVEAKLDADWKSSAGTTKEDSKADDDSKKKSRPFLAPFFSPILLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIVGQALCTTAAVLGGKSLA SQISEKMVALSGGILFIVFGVQSFLSDVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25520			Uncharacterized protein family...		Lus10035040 [exp]	0	1
AT1G63855			Putative methyltransferase fam...		Lus10041869 [exp]	9.9	0.8475
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	10.3	0.8477
AT2G04845			Acyl-CoA N-acyltransferases (N...		Lus10012349 [exp]	10.7	0.8091
AT4G20040			Pectin lyase-like superfamily ...		Lus10001376 [exp]	16.5	0.7936
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10030543 [exp]	18.3	0.8187
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10022603 [exp]	25.1	0.8395
AT1G09050			unknown protein		Lus10037506 [exp]	28.6	0.8417
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	34.4	0.8149
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Lus10003725 [exp]	38.5	0.8367
AT1G30540			Actin-like ATPase superfamily ...		Lus10033600 [exp]	39.4	0.8409

Compare expression of checked genes

Lus10035040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.