Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68660 247 / 2e-85 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034292 [exp] 241 / 9e-83 AT1G68660 234 / 3e-80 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Lus10041479 [exp] 240 / 2e-82 AT1G68660 235 / 1e-80 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117800 [exp] 269 / 5e-94 AT1G68660 271 / 1e-94 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Potri.010G128500 [exp] 258 / 2e-89 AT1G68660 256 / 1e-88 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Potri.010G096600 [exp] 59 / 2e-11 AT1G68660 60 / 1e-11 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2) Potri.008G145500 [exp] 55 / 3e-10 AT1G68660 62 / 8e-13 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02617 [flax] [poplar] ClpS ATP-dependent Clp protease adaptor protein ClpS
Representative CDS sequence Show only first row Show all	>Lus10035041 pacid=23162548 polypeptide=Lus10035041 locus=Lus10035041.g ID=Lus10035041.BGIv1.0 annot-version=v1.0 ATGGAGACTGCGTTCCGCGGGAGAATCACCCTCTCACCTAATCCCTTCTTCAATCCCAAGCCAGGGGACAGACAGATTCTATGTCGAGGACGATGTAATG CCCGTGGGATACTCATGGCAGTATCAGCCACAGCAGCGCCAGGTAAAGGAGGAGGATTGTTGGATAAACCAGTGATAGATAAGCCCACTCCTGGCCGTGA CTCTGAGTTTGACTTAAGGAAATCGAGGAAAATGTCTCCCCCTTACCGTGTGATGCTGCACAATGACGACTTCAACAAACGGGAATACGTAGTCCAAGTG CTGATGAAGGTGATTCCTGGGATGACACTGGACACTGCAGTGAATATAATGCAGGAGGCACACCACAATGGATTGTCGGTGGTGATAATATGCACTCAGG CTGACGCGGAGGAGCACTGCACGCAGCTGCGGGGGAACGGGCTCCTGAGTTCAATCGAACCTGCAAGTGGTGGATGTTAA
AA sequence Show only first row Show all	>Lus10035041 pacid=23162548 polypeptide=Lus10035041 locus=Lus10035041.g ID=Lus10035041.BGIv1.0 annot-version=v1.0 METAFRGRITLSPNPFFNPKPGDRQILCRGRCNARGILMAVSATAAPGKGGGLLDKPVIDKPTPGRDSEFDLRKSRKMSPPYRVMLHNDDFNKREYVVQV LMKVIPGMTLDTAVNIMQEAHHNGLSVVIICTQADAEEHCTQLRGNGLLSSIEPASGGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	0	1
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014460 [exp]	1.0	0.8872
AT1G29530			unknown protein		Lus10025373 [exp]	4.0	0.8555
AT5G35460			unknown protein		Lus10021569 [exp]	4.0	0.8782
AT3G08890			Protein of unknown function, D...		Lus10002862 [exp]	4.5	0.8531
AT5G39250			F-box family protein (.1)		Lus10032969 [exp]	4.5	0.8593
AT3G26100			Regulator of chromosome conden...		Lus10006455 [exp]	4.9	0.8502
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	6.7	0.8681
AT3G47300		SELT	SELT-like protein precursor (....		Lus10040658 [exp]	6.9	0.8583
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031262 [exp]	7.0	0.8571
AT3G05670			RING/U-box protein (.1)		Lus10000086 [exp]	8.8	0.7803

Compare expression of checked genes

Lus10035041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.