Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29700 422 / 3e-148 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021698 [exp] 612 / 0 AT1G29700 436 / 5e-154 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117600 [exp] 458 / 8e-163 AT1G29700 432 / 3e-152 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035042 pacid=23162387 polypeptide=Lus10035042 locus=Lus10035042.g ID=Lus10035042.BGIv1.0 annot-version=v1.0 ATGGCGCTTCAGATCACTTCTCTTCCTTGCTCAACTCCTAATTCAATCAAACACATACCATCGTTCTTCGCTCCCACCCGCCGATCTTCTATCTCTGCAA TCCCCAAGCGCGTCTCATCCACCTCCTCCTCCCTCAATCTCCGAATTAAGCCTTTCATCTCTCCGCCTCTTTACAGATATCAGCAGGATGCTTCTGCTGT TGTATCCGAAGAGAGTGCAGTTGGCTCCAGCTCCCCCGACGCCAGTGTCTTCAACCTCACTTATTTAGAGGGAAACAGTTGGTTGTGGGAGGTGGACGGA GTGAAGATTTTGGTCGACCCGATTCTGGTCGGAAACTTGGATTTCGGTATTCCCTGGCTCTACGATGCTGCCAAGAAGTTCCTCAAATCTTTCCAGCTCA GCGATCTCCCTGAAGTGGACTGCTTATTGATCACACAAAGCCTTGATGATCACTGCCATTTGAAGACGTTGAAGCCCTTCTCGGAGATGTATCCGAATAT TCGAGTGATAGCGACCCCTAATGCCAAGCCATTGCTGGACCCGCTTTTTACCAATGTAATGTACTTGGAACCAGGTGAGGTCTCTGAACTTGAAGCTAAA ACTGGCTCCAAAGTGACAGTCAAAGCTACCCCAGGACCTGTATTGAGACCTCCTTGGCAGCGGCCAGAGAACGGATACCTTGTTAAGTCCCCTCAGGGTG AATCTACTCTTTACTACGAACCCCATTGCGTGTATGACCAGAACTTTCTTGGGAAGGAACATGCTGATATCATTATCACGCCTGTTGTAAAGCAGCTTCT TCCCAGATTTACTCTAGTTTCAGGCCAAGAAGATGCAGTTCGACTTGCAAAGTTGCTGAAAGCAAAGTTCATTGTGCCTATGAGAAATGGAGAACTTGAT AGCAAAGGGTTGCTCGCCAGTATTGTTCAGGCAGAGGGGACACTTGAATCTTTCAAGGAACTTCTATCCCAAGAGATGCCAGATGCTCGCGTTCTCGAGC CAACTCCCGGTATGCCGCTCAAAGTTTCAGCAGCTGAACCTTGA
AA sequence Show only first row Show all	>Lus10035042 pacid=23162387 polypeptide=Lus10035042 locus=Lus10035042.g ID=Lus10035042.BGIv1.0 annot-version=v1.0 MALQITSLPCSTPNSIKHIPSFFAPTRRSSISAIPKRVSSTSSSLNLRIKPFISPPLYRYQQDASAVVSEESAVGSSSPDASVFNLTYLEGNSWLWEVDG VKILVDPILVGNLDFGIPWLYDAAKKFLKSFQLSDLPEVDCLLITQSLDDHCHLKTLKPFSEMYPNIRVIATPNAKPLLDPLFTNVMYLEPGEVSELEAK TGSKVTVKATPGPVLRPPWQRPENGYLVKSPQGESTLYYEPHCVYDQNFLGKEHADIIITPVVKQLLPRFTLVSGQEDAVRLAKLLKAKFIVPMRNGELD SKGLLASIVQAEGTLESFKELLSQEMPDARVLEPTPGMPLKVSAAEP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29700			Metallo-hydrolase/oxidoreducta...		Lus10035042 [exp]	0	1
AT5G57345			unknown protein		Lus10001438 [exp]	2.0	0.9505
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10030103 [exp]	2.6	0.9301
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10037201 [exp]	2.8	0.9452
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10009261 [exp]	3.7	0.9193
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10009352 [exp]	5.5	0.9378
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	8.1	0.9302
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	8.2	0.9375
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	8.4	0.9338
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10013629 [exp]	8.6	0.8990
AT3G02300			Regulator of chromosome conden...		Lus10013197 [exp]	8.8	0.8983

Compare expression of checked genes

Lus10035042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.