Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13270 459 / 7e-163 MAP1B, MAP1C methionine aminopeptidase 1B (.1.2) AT3G25740 395 / 8e-138 MAP1C, MAP1B methionine aminopeptidase 1C (.1) AT4G37040 338 / 4e-115 MAP1D methionine aminopeptidase 1D (.1) AT2G45240 249 / 7e-80 MAP1A methionine aminopeptidase 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021701 [exp] 610 / 0 AT1G13270 518 / 0.0 methionine aminopeptidase 1B (.1.2) Lus10011514 [exp] 351 / 7e-112 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 342 / 1e-108 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10021657 [exp] 250 / 4e-80 AT2G45240 696 / 0.0 methionine aminopeptidase 1A (.1) Lus10001650 [exp] 229 / 4e-72 AT2G45240 637 / 0.0 methionine aminopeptidase 1A (.1) Lus10010905 [exp] 45 / 5e-05 AT1G09300 642 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10031427 [exp] 45 / 8e-05 AT1G09300 637 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10003379 [exp] 44 / 0.0001 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10002851 [exp] 44 / 0.0002 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117200 [exp] 501 / 3e-179 AT1G13270 531 / 0.0 methionine aminopeptidase 1B (.1.2) Potri.005G137400 [exp] 358 / 2e-123 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1) Potri.014G067300 [exp] 247 / 6e-79 AT2G45240 673 / 0.0 methionine aminopeptidase 1A (.1) Potri.010G129101 [exp] 65 / 5e-13 AT1G13270 54 / 1e-09 methionine aminopeptidase 1B (.1.2) Potri.013G007100 [exp] 46 / 3e-05 AT1G09300 643 / 0.0 Metallopeptidase M24 family protein (.1.2) Potri.016G119700 [exp] 42 / 0.0007 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10035045 pacid=23162542 polypeptide=Lus10035045 locus=Lus10035045.g ID=Lus10035045.BGIv1.0 annot-version=v1.0 ATGGATTTCACTGCGTCACTGTCTCACCCCGCTTCCCTGCAGCTCTCTGCTTCCTTTCATGGCGAACTCCCTTCCTCTTCTACTTCCTCAATATCATCTT CCTTCACGGGCTCTCCACTTTCCTTCTCTGCAAATCTGCGAGGTAGAGGAACCCAATCATTTTCTCAACGTAGGCTCGTAGCTTACGCGAAAAGATTATC TGGTTTAGAAGAGGCAATGAAAATCCAACGGGAGAGGGAGCTCAGTACTAGCAATCCTATCGTCAGAAGAAGACCCCCGTTAAGGCGTGGAAAGGTGTCC CCTAGATTACCAGTCCCTGATCATATACCCAAACCTCCTTATGTGGCTACTAGAGAGTTGCCTGAGCTTGCTAGTGAGCATCAGTTTCATGACTCTGATG GGATTCAGAAAATGAGGGCTGCTTGCGAGCTTGCTGCTCGTGTGTTGGACGCTGCTGGTGAATTGGTTAAGCCATCAGTGACAACAAACGAAATTGACAA AGCTGTGCACCAAATGATCATCGATGCTGGTGCATATCCTTCACCTCTTGGTTATGGAGGATTTCCAAAGAGTGTTTGTACGTCCGTTAATGAGTGCATG TGTCATGGCATACCAGATTCTCGCCAACTGCAGGACGGGGACATTATAAACATTGATGTGACCGTCTACTTGAATGGGTACCATGGTGATACGTCGAAAA CATTTATCTGTGGAAATGTTAGTAACGCTTTGAAACGTCTAATAAAGGTGACTGAAGAATGCATGGAGAAAGGAATTTCAGTTTGCAGAGATGGTGCCAG TTTCAGGAAAATTGGCAAAAGAATTAGTGAGCATGCTGAGAAGTATGGTTTCGGCAATGAAGAGGGCGGCATCATGGCTGAAGGTCAAACATTCACCATT GAACCGATTGTTACATTGGGAAGCACGGAGTGTATAACGTGGCCAGACAACTGGACAACGTTGACAGCTGACGGAAGCCCTGCTGCACAGTTTGAGCACA CCATTCTGATCACGAAAACCGGCGCTGAAATCCTGACAACATATTGA
AA sequence Show only first row Show all	>Lus10035045 pacid=23162542 polypeptide=Lus10035045 locus=Lus10035045.g ID=Lus10035045.BGIv1.0 annot-version=v1.0 MDFTASLSHPASLQLSASFHGELPSSSTSSISSSFTGSPLSFSANLRGRGTQSFSQRRLVAYAKRLSGLEEAMKIQRERELSTSNPIVRRRPPLRRGKVS PRLPVPDHIPKPPYVATRELPELASEHQFHDSDGIQKMRAACELAARVLDAAGELVKPSVTTNEIDKAVHQMIIDAGAYPSPLGYGGFPKSVCTSVNECM CHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFICGNVSNALKRLIKVTEECMEKGISVCRDGASFRKIGKRISEHAEKYGFGNEEGGIMAEGQTFTI EPIVTLGSTECITWPDNWTTLTADGSPAAQFEHTILITKTGAEILTTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10035045 [exp]	0	1
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036570 [exp]	1.4	0.9415
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Lus10017084 [exp]	1.4	0.9352
AT1G14270			CAAX amino terminal protease f...		Lus10037179 [exp]	2.8	0.9219
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Lus10006936 [exp]	3.7	0.9034
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10027278 [exp]	6.3	0.9203
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	6.9	0.9166
AT5G11270		OCP3	overexpressor of cationic pero...		Lus10002029 [exp]	9.6	0.8952
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	9.9	0.9289
AT3G07670			Rubisco methyltransferase fami...		Lus10016087 [exp]	10.2	0.8812
AT3G25480			Rhodanese/Cell cycle control p...		Lus10005853 [exp]	11.2	0.9177

Compare expression of checked genes

Lus10035045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.