Plant FIBer expression Database

Lus10035046 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021702
[exp]
194 / 2e-62 AT4G17410 140 / 1e-36 DWNN domain, a CCHC-type zinc finger (.1.2.3)
Lus10034393
[exp]
112 / 3e-30 AT5G47430 186 / 4e-52 DWNN domain, a CCHC-type zinc finger (.1.2.3)
Lus10029205
[exp]
86 / 8e-21 AT5G47430 175 / 2e-48 DWNN domain, a CCHC-type zinc finger (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G156000
[exp]
47 / 1e-06 AT5G47430 620 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3)
Potri.003G078800
[exp]
47 / 1e-06 AT5G47430 635 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0072 Ubiquitin PF08783 DWNN DWNN domain
Representative CDS sequence
>Lus10035046 pacid=23162477 polypeptide=Lus10035046 locus=Lus10035046.g ID=Lus10035046.BGIv1.0 annot-version=v1.0
ATGTCGTCGATGACAGTGCGTTACAAGTTTATGAGTGAGAAGGATTTCCACGATATCCGATTTCCAGAGCGTTACACGACTGTCCGCGATCTGAAATTGG
CAATTTTCAATTCTAGATTCAAAGATAAATATAATAATAAAAATAGTCAGTATCTTAGTATCTGGAACGGCTGCTGTTTAGGAACTGATCACGATCTTCA
CATCATCGATTCCAAAACGAACACCCCGTATAAGAACGACTCCGCTCTGATCTCCGATCAAGCCGCCGTTTTAATCTGCCGCGTCGCAGGCGATCGCGAG
CGGCGGCTCCTGGACACTGAGCCCATCGATTTACGGCCACAACGAGAAGCCGATTCCGAAAGAGTAGCAGTACTAGTACTTGTAGAGTAG
AA sequence
>Lus10035046 pacid=23162477 polypeptide=Lus10035046 locus=Lus10035046.g ID=Lus10035046.BGIv1.0 annot-version=v1.0
MSSMTVRYKFMSEKDFHDIRFPERYTTVRDLKLAIFNSRFKDKYNNKNSQYLSIWNGCCLGTDHDLHIIDSKTNTPYKNDSALISDQAAVLICRVAGDRE
RRLLDTEPIDLRPQREADSERVAVLVLVE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10035046
[exp]
0 1
AT2G46150 Late embryogenesis abundant (L... Lus10027177
[exp]
3.5 0.9238
AT3G14620 CYP72A8 "cytochrome P450, family 72, s... Lus10026681
[exp]
4.2 0.9232
AT4G11650 ATOSM34 osmotin 34 (.1) Lus10005140
[exp]
4.8 0.8568
AT2G23600 ATMES2, ACL, AT... ARABIDOPSIS THALIANA METHYL ES... Lus10012854
[exp]
4.9 0.9238
AT3G04720 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-rela... Lus10013728
[exp]
6.0 0.9238
AT4G37330 CYP81D4 "cytochrome P450, family 81, s... Lus10024817
[exp]
6.9 0.9238
Lus10026928
[exp]
7.7 0.9238
AT3G07680 emp24/gp25L/p24 family/GOLD fa... Lus10006360
[exp]
9.5 0.9202
AT2G21200 SAUR-like auxin-responsive pro... Lus10008992
[exp]
9.5 0.8649
AT5G42905 Polynucleotidyl transferase, r... Lus10034950
[exp]
9.5 0.9119

Lus10035046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.