Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47090 348 / 2e-120 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035063 [exp] 544 / 0 AT5G47090 363 / 2e-126 unknown protein Lus10021704 [exp] 290 / 2e-99 AT5G47090 189 / 1e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G149800 [exp] 368 / 3e-128 AT5G47090 369 / 3e-128 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09747 [flax] [poplar] DUF2052 Coiled-coil domain containing protein (DUF2052)
Representative CDS sequence Show only first row Show all	>Lus10035047 pacid=23162437 polypeptide=Lus10035047 locus=Lus10035047.g ID=Lus10035047.BGIv1.0 annot-version=v1.0 ATGGAGAGCATAACGATGAGGCTCTCCTCGGTAGACAACCTCTACTTCCCTCGTTCTCTACAGCTTCACGCGGCTGATCCGTCCCACCGCAAGTCTCTCC TGCTTGACCTTCTCTCCCGCGACCCCGCCGTCTTCCTAGAGCGGTACGGAGGGCAGTTGACTTCTAATGAGCTTCATGAGTTTGATACTCTTGGTGACGA TTACGAAATAAAATGGCACCTAAAGAATATCAGAAGCAAATTGAGTCCAACTGACGAAGATCTGCGATCAAAGTCAGTTGCAGCAAAGAACCGGAGGCAT GCGTACTTGAATAAACTGATAGGCGACGGTAGCTATTTCTCTGAAGACGCAATGAGGCACAGGGAGCCATATTTGCATCATGAATTTGTCGGCAAGTTTC AAGATCTAAGTGCAAGGACCATGGCAAAGCCAGGGGAACGGTGGTCCGAGACTTTGATTAGGAGAGCTGAGGAAGCGATACTGGTGTCAAAGATTCGGGA AGAGCAGCAGAGACTAGGTGTCTCGGAGAGTGAATGGGTTGGTGGTTATGGAGAAAGCCAACAGCAGGATGAAGAGGAGGAGGAGGAAGAAGAAGTAGAG GAGGACGATGATGATGATGAAGAAAATGCAATGAAGGTTCAAATTAACGTCGAGGGAAGTGCTCCGTCAACCACTGAACAGCATGACAAGGAAGAAACTT TATCAGCTGAGGAGATGGAAGATAGGATGGACCAATTTACTGCGATAATGCACCAGAAATTCCTCTCTGGTGAAGACGATGGGAACTTTGATTATGCAAA AATCGACGAGGATGAGACGTTGGATGATCATTGGTTCGAGGACATAACTCGTGATGCAGAGGATAAGTACTTCGCAGAGGACGACTGA
AA sequence Show only first row Show all	>Lus10035047 pacid=23162437 polypeptide=Lus10035047 locus=Lus10035047.g ID=Lus10035047.BGIv1.0 annot-version=v1.0 MESITMRLSSVDNLYFPRSLQLHAADPSHRKSLLLDLLSRDPAVFLERYGGQLTSNELHEFDTLGDDYEIKWHLKNIRSKLSPTDEDLRSKSVAAKNRRH AYLNKLIGDGSYFSEDAMRHREPYLHHEFVGKFQDLSARTMAKPGERWSETLIRRAEEAILVSKIREEQQRLGVSESEWVGGYGESQQQDEEEEEEEEVE EDDDDDEENAMKVQINVEGSAPSTTEQHDKEETLSAEEMEDRMDQFTAIMHQKFLSGEDDGNFDYAKIDEDETLDDHWFEDITRDAEDKYFAEDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47090			unknown protein		Lus10035047 [exp]	0	1
AT1G16810			unknown protein		Lus10034837 [exp]	1.4	0.9276
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10019388 [exp]	4.2	0.9224
AT4G37440			unknown protein		Lus10001409 [exp]	5.3	0.9102
AT4G14385			unknown protein		Lus10003559 [exp]	8.5	0.9137
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10039656 [exp]	11.7	0.8973
AT5G11680			unknown protein		Lus10027000 [exp]	12.6	0.9025
AT3G52220			unknown protein		Lus10038762 [exp]	13.5	0.9216
AT2G17350			unknown protein		Lus10026564 [exp]	15.1	0.8838
AT2G37480			unknown protein		Lus10003982 [exp]	15.4	0.9046
AT1G55160			unknown protein		Lus10019322 [exp]	15.9	0.9083

Compare expression of checked genes

Lus10035047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.