Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26110 274 / 8e-84 DCP5 decapping 5 (.1.2) AT5G45330 125 / 4e-30 DCP5-L decapping 5-like (.1) AT4G19360 81 / 1e-17 SCD6 protein-related (.1.2) AT4G19330 53 / 4e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G19340 48 / 8e-06 SCD6 protein-related (.1) AT4G19260 48 / 9e-06 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G35660 43 / 0.0004 Glycine-rich protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017885 [exp] 820 / 0 AT1G26110 473 / 5e-160 decapping 5 (.1.2) Lus10017884 [exp] 677 / 0 AT1G26110 462 / 6e-156 decapping 5 (.1.2) Lus10035052 [exp] 670 / 0 AT5G45330 422 / 4e-140 decapping 5-like (.1) Lus10033287 [exp] 119 / 5e-28 AT1G26110 222 / 3e-65 decapping 5 (.1.2) Lus10034747 [exp] 117 / 1e-27 AT1G26110 229 / 5e-68 decapping 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114900 [exp] 487 / 2e-165 AT1G26110 419 / 5e-139 decapping 5 (.1.2) Potri.010G131400 [exp] 457 / 3e-154 AT1G26110 494 / 1e-168 decapping 5 (.1.2) Potri.004G104000 [exp] 243 / 4e-72 AT1G26110 207 / 7e-59 decapping 5 (.1.2) Potri.017G111500 [exp] 228 / 2e-66 AT1G26110 208 / 2e-59 decapping 5 (.1.2) Potri.004G235100 [exp] 147 / 1e-37 AT5G45330 229 / 7e-68 decapping 5-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09532 [flax] [poplar] FDF FDF domain
Representative CDS sequence Show only first row Show all	>Lus10035051 pacid=23162406 polypeptide=Lus10035051 locus=Lus10035051.g ID=Lus10035051.BGIv1.0 annot-version=v1.0 ATGACGACGGAGAATAGTGCGACATCCAGATCGAATTCAGCGGCGGATTCGTACATAGGAAGCTTGATAAGCTTGACTTCCAAGAGTGAGATCAGATATG AAGGCGTTCTTTACAACATCAATACTGACGAGTCCAGTATTGGATTGAAAAACGGTAACCACTTCGTAGCTGGAAATTCTTGGGGAGGGGTTCGGTCCTT CGGAACTGAAGGACGGAAAAAGGATGGCCCGCAAATCCCTCCCAGTGACAAAGTGTATGAGTACATATTGTTCCGAGGAACTGACATTAAGGACTTGCAG GTTAAATCATCACCCCCAGCTCTTCAGCCCGCGCCGCCTCTAAACAATGATCCAGCTATTATACAGTCTCACTATCCTCGACCAGTTTCAACTTCTTCGG GCATGCCTTCTGCTGTTTCTGGATCCTTGCCTGATGCCGGGTCCCAAAATGCACAAATGGGAATGTCTGCACCAAATTATCAAAGTGGTTTGCCATTGTA TCAACCTGCAGGAGCCTTAGGAACATGGGGGCCTTCACCTCCTCCAAATGCAAATGGAACTGGGCTTGCTATGCCGATGTACTGGCAAGGGTATTATGGT CCTCCTAACGGGCTTCCGCAAATGCACCAGCAATCTTTGCTTCGTCCACCACAAGGGTTGACAATGCATTCTCCTATGCAGCAGCAAATGCAATATCCGA ACTTTAATGCCCCGTTACCTATCGGAGCTTCAAACTTTCCGGTATCAAATATGCCCACTCAAAGCCTGCCACCATCAAATATGCCCACTCAAAGCTTGCC ATCATCAAATATGCCCACTCAAAACTTGCCACCATCAAATCTTCCAGTGTCAAACTTTCCACCATCAAATCGGCCAGCGTCAAACTTTCCACCATCAAAT CTGCCAGCGTCAAACTTGCCACCAGCTTCAAACTTGCTAACGTCCATGTCTGATGTTTCACCTCTACTCCCTACCAGCATTTCTGTAAACTCAATGTCGC TGTCCTCAACTCTGCTTCCAACCCTTACATCAGTGCCCTCTTCTACCGAACCTTCTTCTGATGCATTGCCTGGTTTAGTACCTGCCCGGGCTACCAACTT AGTTCTTCCAGCATCCAACTTAAGTCCCAACTTTCCCTCCCTAATACAACTACCAACTTCAATGTCTGAATTGAATCCCATTTCTGGAAAGCCTAACCAA GTTGCTGCTCAAGTGATTCCTAGCACCGGGCAGCCCGAATCATCAGCCTCTGGTCCTTCAGTTCCTTATCATAACACTGTAAAGCCAGTTTCACCAGCTG CTGCATCACGCACCGAAGCACCAACACCTTCACTGGTAACCCCTGGCCAGCTACTGCAATCTGTACCTGCAGCAGTTATTAGGTCATCCGAGCCCGAGCA AGCAGCTCATATGGACGTGAAAGTTATTCAAGCGTCTGCAACATCTTCATCAGAACCAGTTCTTCCCATTGCTACAGAAGCTCAGCCACCAATTCTCCCG CTGCCTGTACCCTCTCGTACTAGCCATAAGCCAAACGGAGCTCCATATCACTCTCGCCATAATCATGGCTACCGTGGACGGGATAGGGGAAGGGGAGTTG GGGGTTCACGTCCGCTGACTAAATTTACGGAGGATTTTGATTTTAATGCAATGAATGAGAAATTTAATAAGGATGAAGTATGGGGTCACCTTGGTAAGAA CAAGACGAAAGACAAAGACGATGTCAAAGCCAGTGATGAAGATGATTTTGAAGAGGAAGATGAGGTCGGCAAGCCATACAATGGCCAAGGGGACGATCTC GCGGTTCGTACAATGGAAGGGGATATAATGGGTATGGTTACAATGGTTTGA
AA sequence Show only first row Show all	>Lus10035051 pacid=23162406 polypeptide=Lus10035051 locus=Lus10035051.g ID=Lus10035051.BGIv1.0 annot-version=v1.0 MTTENSATSRSNSAADSYIGSLISLTSKSEIRYEGVLYNINTDESSIGLKNGNHFVAGNSWGGVRSFGTEGRKKDGPQIPPSDKVYEYILFRGTDIKDLQ VKSSPPALQPAPPLNNDPAIIQSHYPRPVSTSSGMPSAVSGSLPDAGSQNAQMGMSAPNYQSGLPLYQPAGALGTWGPSPPPNANGTGLAMPMYWQGYYG PPNGLPQMHQQSLLRPPQGLTMHSPMQQQMQYPNFNAPLPIGASNFPVSNMPTQSLPPSNMPTQSLPSSNMPTQNLPPSNLPVSNFPPSNRPASNFPPSN LPASNLPPASNLLTSMSDVSPLLPTSISVNSMSLSSTLLPTLTSVPSSTEPSSDALPGLVPARATNLVLPASNLSPNFPSLIQLPTSMSELNPISGKPNQ VAAQVIPSTGQPESSASGPSVPYHNTVKPVSPAAASRTEAPTPSLVTPGQLLQSVPAAVIRSSEPEQAAHMDVKVIQASATSSSEPVLPIATEAQPPILP LPVPSRTSHKPNGAPYHSRHNHGYRGRDRGRGVGGSRPLTKFTEDFDFNAMNEKFNKDEVWGHLGKNKTKDKDDVKASDEDDFEEEDEVGKPYNGQGDDL AVRTMEGDIMGMVTMV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10035051 [exp]	0	1
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10015928 [exp]	3.2	0.9060
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10000896 [exp]	4.2	0.9140
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	8.3	0.9220
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10018073 [exp]	9.2	0.9066
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10016448 [exp]	10.7	0.9058
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10021823 [exp]	12.0	0.8967
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	12.2	0.9102
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10004044 [exp]	17.5	0.8983
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10003487 [exp]	17.9	0.8939
AT5G45330		DCP5-L	decapping 5-like (.1)		Lus10035052 [exp]	18.4	0.8820

Compare expression of checked genes

Lus10035051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.