Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26110 280 / 1e-85 DCP5 decapping 5 (.1.2) AT5G45330 129 / 2e-31 DCP5-L decapping 5-like (.1) AT4G19360 89 / 3e-20 SCD6 protein-related (.1.2) AT4G19260 52 / 6e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G19340 51 / 6e-07 SCD6 protein-related (.1) AT4G19330 51 / 2e-06 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017884 [exp] 891 / 0 AT1G26110 462 / 6e-156 decapping 5 (.1.2) Lus10017885 [exp] 795 / 0 AT1G26110 473 / 5e-160 decapping 5 (.1.2) Lus10035051 [exp] 685 / 0 AT1G26110 297 / 1e-92 decapping 5 (.1.2) Lus10033287 [exp] 131 / 5e-32 AT1G26110 222 / 3e-65 decapping 5 (.1.2) Lus10034747 [exp] 126 / 2e-30 AT1G26110 229 / 5e-68 decapping 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114900 [exp] 550 / 0 AT1G26110 419 / 5e-139 decapping 5 (.1.2) Potri.010G131400 [exp] 550 / 0 AT1G26110 494 / 1e-168 decapping 5 (.1.2) Potri.004G104000 [exp] 371 / 7e-121 AT1G26110 207 / 7e-59 decapping 5 (.1.2) Potri.017G111500 [exp] 255 / 1e-76 AT1G26110 208 / 2e-59 decapping 5 (.1.2) Potri.004G235100 [exp] 164 / 2e-43 AT5G45330 229 / 7e-68 decapping 5-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09532 [flax] [poplar] FDF FDF domain
Representative CDS sequence Show only first row Show all	>Lus10035052 pacid=23162596 polypeptide=Lus10035052 locus=Lus10035052.g ID=Lus10035052.BGIv1.0 annot-version=v1.0 ATGGAGAATAGTGCCAATTCGACTTCGACATCCAGATCGAATTCAGCGGCGGATTCATACATAGGAAGCTTGATAAGCTTGACTTCCAAGAGTGAGATCA GATATGAAGGCGTTCTTTACAACATCAACACTGATGAGTCTAGTATCGGATTGAGAAATGTTCGGTCCTTCGGAACTGAAGGACGGAAAAAGGATGGTCC GCAGATCCCTCCCAGTGACAAAGTGTATGAGTACATACTGTTCCGAGGAACTGACATCAAGGACTTGCAGGTTAAGTCATCACCCCCTGTTCTTCAGCCC ACGCCATCTATCAACAATGATCCAGCTATTATACAGAGACAGCCTTCTACTGTTGCTCAGTCACCGGCATTTTTCATGCAGTCTCACTATCCTCGACCAG TTTCGACTTCTTTGGGCATGCCTTCTGCTGTTTCTGGATCCTTGCCTGATCCTGGGCCCCAAAATGCACAAATGGGAATGTCTGCACCAAATTATCAAAG TGGTTTGCCATTGTATCAGCCTGCAGGAGCTTTAGGAACATGGGGGCCTTCACCTCCTCCAAATGCAAATGGAACTGGGCTTGCTATGCCGATGTACTGG CAAGGGTATTATGGTCCTCCTAATGGGCTTCCTCAAATGCACCAGCAACAATTGCTTCGTCCACCGCAAGGGCTCACAATGAATTCTACTATGCAGCAGC AAATGCAATATCCGAACTTTAATGCCCCGTTACCTGTCGGAGTTTCAAACTTCCCGGTATCAAATATGCCCTCTCAAAACATGCCACCGTCCAATCTTCC AGCCTCAAACTTGACACTGTCCAATCTGCCAGCCTTAAACTTGCCACCAGCTTCGAACATGCTAACTTCTATACCCATTGTTTCACCTCCTCTACTCCCT ACCAGCACTTCTGTTAACTCTATGCCGTTGTCTTCAGGCCTGCCTCCAACCCTTACAACAGAGCCTTCTTCTACCATACCTTCTGAAGCATTGCCTGGTT TGGTACCTGCCCGGGCAACCAACTCAGTTATTCCAGCATCCAACTTAAGTGCCAACTTGCCATCCCTAACACAACTACCAACTTCAATATCTGAATTGAA CCACATTCCTGGCAAGCCTAACCCAGTTGCTGCTCCTGCAATACCTTATTCTAGCAGCGTACAGCCTGAATCATCAGCTGCTGGTCCTTCAGTTCCTTTG TATAACACTGCACTGCCGGCATCATCAGCTGCTGCATCACGCACAGAATCTCCTTCACTGGTAACCCCTGGCCAGTTACTGCAATCTGGACCTTCAGCAG TTCAGTCATCCGAGCCCCTGCAAACAGCTCATACTGACGTGAAAGTTATTCAGCCGTCTGCAACGTCTTCGTCAGAACCAGTTCTCCCCATTCCCAAGGA AGCTCAACCACCAATTCTCCCATTGCCTGTACCTTCTCGGTCAGGCTATAAGCCTAACGGAGCTCCATACCATACTCGCCATGGTCATGGCTATCGTGGA CGGGATAGAGGAAGAGGAGTTGGGGGTTCACGTCCGATGACTAAATTTACTGAGGATTTTGACTTTTTGGCAATGAATGAGAAATTCAATAAGGACGAAG TATGGGGTAACCTTGGTAAGAACAAGGCAAAGGACAAAGAAGACGGCAAAGCCAGTGATGAAGATGATTTTGAAGAGGAAGATGATGTCGGCAAGCCGGT ATACAACAAGGACGACTTTTTTGATACCCTTTCGAGCCATACACTTGGCCGCGATTCACAAAATGGAAGGCCTAGATTCTCGGATCAAATGAAGTTAGAC ACAGAGACTTTTGGTGATTTCCCAAGATATCGAGGCCGTGGAGGGCCACGGGGACGGTCTCGTGGTTCATACTATGGAAGGGGATATGGGTATGGATATA ATGGTGGGAGGGGACGTGGGAACCGTGATTCCTAG
AA sequence Show only first row Show all	>Lus10035052 pacid=23162596 polypeptide=Lus10035052 locus=Lus10035052.g ID=Lus10035052.BGIv1.0 annot-version=v1.0 MENSANSTSTSRSNSAADSYIGSLISLTSKSEIRYEGVLYNINTDESSIGLRNVRSFGTEGRKKDGPQIPPSDKVYEYILFRGTDIKDLQVKSSPPVLQP TPSINNDPAIIQRQPSTVAQSPAFFMQSHYPRPVSTSLGMPSAVSGSLPDPGPQNAQMGMSAPNYQSGLPLYQPAGALGTWGPSPPPNANGTGLAMPMYW QGYYGPPNGLPQMHQQQLLRPPQGLTMNSTMQQQMQYPNFNAPLPVGVSNFPVSNMPSQNMPPSNLPASNLTLSNLPALNLPPASNMLTSIPIVSPPLLP TSTSVNSMPLSSGLPPTLTTEPSSTIPSEALPGLVPARATNSVIPASNLSANLPSLTQLPTSISELNHIPGKPNPVAAPAIPYSSSVQPESSAAGPSVPL YNTALPASSAAASRTESPSLVTPGQLLQSGPSAVQSSEPLQTAHTDVKVIQPSATSSSEPVLPIPKEAQPPILPLPVPSRSGYKPNGAPYHTRHGHGYRG RDRGRGVGGSRPMTKFTEDFDFLAMNEKFNKDEVWGNLGKNKAKDKEDGKASDEDDFEEEDDVGKPVYNKDDFFDTLSSHTLGRDSQNGRPRFSDQMKLD TETFGDFPRYRGRGGPRGRSRGSYYGRGYGYGYNGGRGRGNRDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45330		DCP5-L	decapping 5-like (.1)		Lus10035052 [exp]	0	1
AT1G67930			Golgi transport complex protei...		Lus10020753 [exp]	2.0	0.9073
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10001675 [exp]	3.3	0.9089
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10006062 [exp]	7.9	0.9000
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10010887 [exp]	10.2	0.9036
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10018486 [exp]	10.2	0.8617
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10015290 [exp]	10.8	0.8995
AT4G16180			unknown protein		Lus10037780 [exp]	13.1	0.9055
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	13.6	0.9018
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023305 [exp]	15.0	0.8377
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10026663 [exp]	16.9	0.8838

Compare expression of checked genes

Lus10035052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.