Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21360 229 / 3e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017883 [exp] 622 / 0 AT3G21360 247 / 2e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025818 [exp] 220 / 2e-69 AT3G21360 496 / 6e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038283 [exp] 219 / 2e-69 AT3G21360 494 / 1e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025819 [exp] 216 / 6e-68 AT3G21360 428 / 2e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006838 [exp] 198 / 3e-61 AT3G21360 397 / 5e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006839 [exp] 181 / 1e-54 AT3G21360 435 / 3e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037585 [exp] 180 / 4e-54 AT3G21360 454 / 2e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006835 [exp] 177 / 7e-53 AT3G21360 375 / 4e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038282 [exp] 167 / 3e-50 AT3G21360 367 / 2e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G131300 [exp] 489 / 1e-175 AT3G21360 241 / 3e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131200 [exp] 474 / 9e-170 AT3G21360 250 / 2e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G190100 [exp] 226 / 6e-72 AT3G21360 501 / 5e-180 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02668 [flax] [poplar] TauD Taurine catabolism dioxygenase TauD, TfdA family
Representative CDS sequence Show only first row Show all	>Lus10035053 pacid=23162482 polypeptide=Lus10035053 locus=Lus10035053.g ID=Lus10035053.BGIv1.0 annot-version=v1.0 ATGGCGAGCAGCAAGTACTTCAAGATCGGGAGCTGCGAAGGGCAGAAGGAGGTGGACGGAGAAACGATGCCGTTGGTGCTCGAGCCGGCCGACCAAGACA ACAAGGACATCGGGTCCCTCCTGGAGGCTCTGAGCAACAACAAGGAGTGGTTCGACCAAATGATCACCAAAAACAGCGCCGTTTTGCTCCGCGGGTTCGA CGTCCAGAGCGCCGTCAACTTCAACGACATCGTTGAGGCTTGCGACTGGGAGGACATCAGGTATGTGGGGCCCGCCCCTCGTACCCACATCCACAAGCGG GTATGGACCGCCAACGAGGGCCCGCTCTCCGAGTTCATCTACTACCACCATGAGATGGTCCTGATAAAGGAGTTTCCGAAGAAGGTGATATTGTACTGCG AGATTCCGCCGACGGAAGGAGGGGAGACGCCGTTTGTTCCGAGCTTCAAAGTGACGGAGAAGATGGTGAAGGAGTTTCCGGAAGAAGTGGAGGAGATAGA GAAGAAAGGACTGATGTACACATTCTCAGCTCCGACAAGGAACACAACTACTTCCATGAGAGGCAGAGGTTGGGAGGATGCTTTCCTCACTTCCGACAAA CACGAGGCCGAGATCAGGGCAAAGGCTCTAGGAATGGAGATAGAGTGGCTCCCAAACGGAGGAGCCAAGACGATATTGAGACCACGGTCACTGACTAGGG TGTTCGAAGGGAGGAAAGGGAGAAGGATGTGGTTCAACACTGTCGTCGGAATGCACGGCAAGGAGCAGAGCTCCGCAACAATGGCGGACGGGACAGAGAT ACCAGAGAAGTTTGTGAAAAGGTGTGGGGAGATACTTGAAGAAGAGAGCATCCAGTTCAAGTGGCAGAAGGGTGACGTGGCCTTCTTCGACAACTGGGCT CTGTTCCATGGAAGAAGGCCTTCTTCTGCTCCAAGGAAAGTTCTTGTTGCCACCTGCAAGTGA
AA sequence Show only first row Show all	>Lus10035053 pacid=23162482 polypeptide=Lus10035053 locus=Lus10035053.g ID=Lus10035053.BGIv1.0 annot-version=v1.0 MASSKYFKIGSCEGQKEVDGETMPLVLEPADQDNKDIGSLLEALSNNKEWFDQMITKNSAVLLRGFDVQSAVNFNDIVEACDWEDIRYVGPAPRTHIHKR VWTANEGPLSEFIYYHHEMVLIKEFPKKVILYCEIPPTEGGETPFVPSFKVTEKMVKEFPEEVEEIEKKGLMYTFSAPTRNTTTSMRGRGWEDAFLTSDK HEAEIRAKALGMEIEWLPNGGAKTILRPRSLTRVFEGRKGRRMWFNTVVGMHGKEQSSATMADGTEIPEKFVKRCGEILEEESIQFKWQKGDVAFFDNWA LFHGRRPSSAPRKVLVATCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10035053 [exp]	0	1
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10017883 [exp]	2.0	0.8186
AT2G24580			FAD-dependent oxidoreductase f...		Lus10042437 [exp]	4.7	0.8499
AT1G06475			unknown protein		Lus10015269 [exp]	8.5	0.8218
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036088 [exp]	11.0	0.8228
AT3G13130			unknown protein		Lus10039066 [exp]	15.5	0.8085
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10000868 [exp]	15.7	0.7931
AT2G29500			HSP20-like chaperones superfam...		Lus10016458 [exp]	18.2	0.7959
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10009608 [exp]	19.2	0.7857
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10012848 [exp]	28.3	0.7910
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031843 [exp]	28.5	0.7629

Compare expression of checked genes

Lus10035053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.