Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25680 438 / 5e-148 unknown protein AT5G23890 229 / 7e-65 unknown protein AT5G52410 191 / 2e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021714 [exp] 842 / 0 AT3G25680 456 / 1e-153 unknown protein Lus10038854 [exp] 219 / 2e-61 AT5G52410 709 / 0.0 unknown protein Lus10014972 [exp] 212 / 5e-59 AT5G23890 700 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G131000 [exp] 535 / 0 AT3G25680 502 / 2e-173 unknown protein Potri.015G145700 [exp] 224 / 3e-63 AT5G23890 709 / 0.0 unknown protein Potri.012G142500 [exp] 212 / 5e-59 AT5G23890 650 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035054 pacid=23162408 polypeptide=Lus10035054 locus=Lus10035054.g ID=Lus10035054.BGIv1.0 annot-version=v1.0 ATGAGCTCGTCGTCAGCCACCGGACCTCCGTCATCCCTTTTCCTCCGTCCGACCGACGCTCCTTCCCTTTCTCGGCGTCGCAATGTCGTCATCCTAAGCT CTTTTTCCATTTCATTTCTCCGATCCAAAAACCCTAGGTTACTCCGCCTCTCTGCTACTCCCATCGATGGTCAACTTGACATCTCTTGGTTCCTCCCTAC TCCTACCAACCCTCCTTCTGCCGATGCCAACGGCAATGACTTCAACGGCTGGGCCATCGTCGAAGTCCCTCCGCCGCCCAAGAAGGAGAAGAAAGGACTT CCCAAGGGGGTAATTGGTGGAATTGGGGTTTGTGCTGCTGCGGCTGTTGCCGCCGCTGCATTGTTCTCACTCTCGAGAAGTGGATTTAGATTGCAACTTC GCAGCCCTAAGGATGCCATTGTAACTAATGAGGATACCCAAATCGAAACCGACAACGAAACCAGGGACGTTGGTTTGGGTGATGAAGATGAGGGTGTTTC TGAGGTTATCCGTGAGTCTATTGCTGAGCATCCTTTGGAATACGAAATTTCTGCTACATCATCTAGAGATAAGAATGGACGTGCTCAAGTTTCAGTTGCT TTGGATTCAACTCAAATGGAAGCCCTTGTGAACTTGCAGAAACTGAAGATAATTGAAGACAACATAATGGTTGATGACTTATGCACTAGAAGGGACTATG CAAGATGGTTGGTCCGCCTAAATTCCCTACTTGAGAGAAATCCCAAGCATAGAATTGTGCCGACTATATCTTTGTCAGGCTCACTTATGGCTGCATTTGA TGATGTTAACATCGATGATCCAAATTTTGTGTATATTCAAGCTCTAGCGGAGGCTGGAATCATACCAAGCAAATTGTCTTCAGCAAGTTTGTTTTGTGAC ACTGTAGAAGAAGCAATCTCTTACTTTTACCCAGATAGGCACCTTTCTCGTAAAGATATGATCAACTGGAGAACTCAGCTAGAATATGGCATCTCGCCAG GAACAAAAGAGCAGATGTCAAGAATAAGAGCAGATTACATTGATGTGAAGGCAATCACTTCAGATGCATCGCCCGAATTTTTCACTGACATGCTGGCTGG CGAGAAAAGTATAATCAGAAAAGTTTTTGGACAGAGCAGGCGTTTTCAGCCAAATAAACCATCAACCAAGGCACAAGCAGCTGTGGCACTAACTAGTGGC AGAATGACGGAAGCAGTTCACAGCGAATTATACAGACTGGAAGCAGAGAGTTCTTCAAGGCAAGCTGCTGTCGAAGAAATAAGGTCCGAGTTACTTGAAA GGGGTGATATAGTAAATTTTTGGAATGAGAAGCTGCTAGCAGAAAGAAACCGTTTAATGGAGGAGCAGGAGCTCTACACTACCACCTTACAGGATTTGGA TATGGAGAAGGATGTTAAGGTCAAATCTTTGGTAGAGAACACGAAGGAGAAGGCAGCTATGGAGTGTCAGAGACAACTGATTCTAACTCTTAGGCAAGAG ATTGATGAGATGTCAGAAAGGCTTACATCTGAGAGGGCTGCATGTGTGGCTGAGCAATGTAACATTCCGGAGTTGAGGAAAGCAGCAACGACTAATCTGG AAGGAGTTCGTGATGCCAAATCCATATTGGAAGCTGAAATTGAAGCTTTAAAAACGCTCAGGACTTGGGTAGAAGATGAAGCAAAGAAAAGCCAGGCGCG CGCTAAAGTTCTCGGGGAGGTAGGACGTAGGTGGAAATGGGACAACTGA
AA sequence Show only first row Show all	>Lus10035054 pacid=23162408 polypeptide=Lus10035054 locus=Lus10035054.g ID=Lus10035054.BGIv1.0 annot-version=v1.0 MSSSSATGPPSSLFLRPTDAPSLSRRRNVVILSSFSISFLRSKNPRLLRLSATPIDGQLDISWFLPTPTNPPSADANGNDFNGWAIVEVPPPPKKEKKGL PKGVIGGIGVCAAAAVAAAALFSLSRSGFRLQLRSPKDAIVTNEDTQIETDNETRDVGLGDEDEGVSEVIRESIAEHPLEYEISATSSRDKNGRAQVSVA LDSTQMEALVNLQKLKIIEDNIMVDDLCTRRDYARWLVRLNSLLERNPKHRIVPTISLSGSLMAAFDDVNIDDPNFVYIQALAEAGIIPSKLSSASLFCD TVEEAISYFYPDRHLSRKDMINWRTQLEYGISPGTKEQMSRIRADYIDVKAITSDASPEFFTDMLAGEKSIIRKVFGQSRRFQPNKPSTKAQAAVALTSG RMTEAVHSELYRLEAESSSRQAAVEEIRSELLERGDIVNFWNEKLLAERNRLMEEQELYTTTLQDLDMEKDVKVKSLVENTKEKAAMECQRQLILTLRQE IDEMSERLTSERAACVAEQCNIPELRKAATTNLEGVRDAKSILEAEIEALKTLRTWVEDEAKKSQARAKVLGEVGRRWKWDN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25680			unknown protein		Lus10035054 [exp]	0	1
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10031062 [exp]	5.3	0.8764
					Lus10029394 [exp]	12.0	0.8517
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10018659 [exp]	12.8	0.8461
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10009644 [exp]	14.2	0.8082
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10042240 [exp]	14.5	0.8604
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10029028 [exp]	15.7	0.8077
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10040281 [exp]	18.7	0.8165
AT2G47640			Small nuclear ribonucleoprotei...		Lus10026556 [exp]	20.0	0.8554
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026269 [exp]	21.1	0.8316
AT1G80640			Protein kinase superfamily pro...		Lus10026091 [exp]	21.8	0.8401

Compare expression of checked genes

Lus10035054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.