Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68810 251 / 2e-80 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 188 / 2e-56 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT2G41130 110 / 5e-28 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56770 100 / 1e-24 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G40200 78 / 3e-16 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G38070 67 / 1e-11 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00050 45 / 7e-05 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 44 / 0.0002 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT5G61270 43 / 0.0002 bHLH PIF7, bHLH072 phytochrome-interacting factor7 (.1.2) AT4G36930 42 / 0.0004 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021711 [exp] 398 / 8e-138 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034271 [exp] 178 / 5e-53 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 173 / 7e-51 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10042017 [exp] 103 / 2e-25 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018020 [exp] 103 / 3e-25 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013917 [exp] 89 / 6e-20 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001885 [exp] 87 / 2e-19 AT1G68810 124 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007502 [exp] 84 / 1e-18 AT2G40200 163 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038306 [exp] 81 / 2e-17 AT3G56770 102 / 2e-26 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116000 [exp] 279 / 9e-92 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 278 / 5e-91 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037100 [exp] 122 / 2e-32 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G035400 [exp] 115 / 8e-30 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G089000 [exp] 97 / 7e-23 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G055700 [exp] 94 / 5e-22 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G070800 [exp] 90 / 2e-20 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G065500 [exp] 89 / 2e-20 AT1G68810 113 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G186700 [exp] 88 / 7e-20 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G117600 [exp] 87 / 2e-19 AT3G56770 112 / 8e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10035056 pacid=23162426 polypeptide=Lus10035056 locus=Lus10035056.g ID=Lus10035056.BGIv1.0 annot-version=v1.0 ATGATCATGTGCGGATTGAAAGAAGACGACATCAACAACAACAACACTAATAATCTTCAACAACGGCATCATCAAGGAGGAGGAGGAGGAGATCACTGCA CCTTCCAATCTTATAACAACAGCCAAAACGAAGCGTTTCATCAAATGCAACATCACCACCACTACCACCACCAGCCGACAACATCCTTCTCAGATTTCAC TACCCCTCCGCCTCCATGGGGACACCACCACCAATATCCCTTACACGACCAGTTCCTCGTCCCTCCACCTCTTCCTCCGCCTACTTCATCCTACGGTGGA GGAGGAGGACGGTTTTTCAACAGGGGTATGCAGTTTGCTTACGACTCCTCGTCTGCTCATGCGGATCACTTGAGGATAATATCCGAAACTCTAGGGCCAG TGATTCACCCTGGAGCAGGAGGAGGGGTTCCATTCGGGCTGCAAGCGGAATTGGGGAAGATGACTGCTCAGGAGATCATGGATGCCAAAGCTCTGGCTGC TTCCAAGAGCCACAGCGAGGCTGAGAGGCGGCGCAGGGAGAGGATTAATAACCACCTCGCCAAACTCCGTAGCTTGCTCCCCAGCACCACCAAAACGGAC AAGGCGTCATTGCTGGCGGAGGTAATCCAACACGTCAAGGAACTGAAGCGCCAAACCAACCTAATAGCAGAAACCACTCCGATCCCCACCGAATCCGACG AGCTCACCGTCGACGCCACCAACTCCGTCGACGAAGACGGTAAGTTCGTCATCAAGGCCTCCCTCTGCTGCGAAGACAGGTCAGACCTCCTCCCTGACCT CATCAGAACCCTCAAGTCACTCCGTCTCCGTACCCTCAAGGCCGAGATCACCACCCTCGGCGGCAGGGTAAAAAACGTCCTTTTCATCACCGCCGACCAA CATGATGATGATGATGATGAAAATGAAGACCAACATGATCAGGAGCAGCCGGTTCAGTACTCGATAAGCTCCATCCACGAGGCCCTGAAGGCCGTCATGG AGAAGGGCGGCGGTGGAGGAGGAGACGAGTCGTCTTCGTCGGGGAGTGTGAAGAGACAGCGGACTAATACTAGTAACAACGTTAATATGATGGAACAACA ACAACAGTTGCTGCAGCAGCATCATATGTCTCTATAA
AA sequence Show only first row Show all	>Lus10035056 pacid=23162426 polypeptide=Lus10035056 locus=Lus10035056.g ID=Lus10035056.BGIv1.0 annot-version=v1.0 MIMCGLKEDDINNNNTNNLQQRHHQGGGGGDHCTFQSYNNSQNEAFHQMQHHHHYHHQPTTSFSDFTTPPPPWGHHHQYPLHDQFLVPPPLPPPTSSYGG GGGRFFNRGMQFAYDSSSAHADHLRIISETLGPVIHPGAGGGVPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTD KASLLAEVIQHVKELKRQTNLIAETTPIPTESDELTVDATNSVDEDGKFVIKASLCCEDRSDLLPDLIRTLKSLRLRTLKAEITTLGGRVKNVLFITADQ HDDDDDENEDQHDQEQPVQYSISSIHEALKAVMEKGGGGGGDESSSSGSVKRQRTNTSNNVNMMEQQQQLLQQHHMSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10035056 [exp]	0	1
AT3G25710	bHLH	TMO5, BHLH32, b...	TARGET OF MONOPTEROS 5, basic ...		Lus10041493 [exp]	1.0	0.7741
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10010538 [exp]	3.9	0.6992
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10012801 [exp]	6.7	0.6390
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10029293 [exp]	8.0	0.7269
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10002288 [exp]	15.2	0.7013
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Lus10011468 [exp]	20.9	0.7220
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10005035 [exp]	21.0	0.6255
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10019241 [exp]	24.1	0.6922
AT3G26750			unknown protein		Lus10021459 [exp]	29.2	0.6442
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10017988 [exp]	30.9	0.6280

Compare expression of checked genes

Lus10035056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.