Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68820 630 / 0 Transmembrane Fragile-X-F-associated protein (.1) AT1G73950 575 / 0 Transmembrane Fragile-X-F-associated protein (.1) AT1G18470 562 / 0 Transmembrane Fragile-X-F-associated protein (.1.2) AT4G39050 56 / 5e-08 Kinesin motor family protein (.1) AT2G21380 54 / 1e-07 Kinesin motor family protein (.1) AT3G06140 47 / 2e-05 RING/U-box superfamily protein (.1) AT4G24204 45 / 2e-05 RING/U-box superfamily protein (.1.2.3) AT5G19080 46 / 3e-05 RING/U-box superfamily protein (.1) AT1G63900 44 / 9e-05 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT2G35330 44 / 0.0002 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021710 [exp] 791 / 0 AT1G18470 687 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10042969 [exp] 545 / 0 AT1G18470 698 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10032471 [exp] 545 / 0 AT1G18470 701 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10017969 [exp] 56 / 3e-08 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10027994 [exp] 55 / 6e-08 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10028790 [exp] 55 / 1e-07 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10008163 [exp] 50 / 1e-06 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10004419 [exp] 49 / 5e-06 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10034030 [exp] 49 / 6e-06 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G116400 [exp] 630 / 0 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.012G060100 [exp] 594 / 0 AT1G18470 673 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.015G050300 [exp] 591 / 0 AT1G18470 748 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.010G129932 [exp] 123 / 5e-34 AT1G68820 120 / 5e-33 Transmembrane Fragile-X-F-associated protein (.1) Potri.004G161100 [exp] 57 / 1e-08 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.014G138000 [exp] 55 / 3e-08 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.009G122100 [exp] 56 / 6e-08 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.010G030600 [exp] 48 / 1e-05 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.008G198300 [exp] 47 / 2e-05 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2) Potri.003G090000 [exp] 46 / 4e-05 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10269 [flax] [poplar] Tmemb_185A Transmembrane Fragile-X-F protein
Representative CDS sequence Show only first row Show all	>Lus10035057 pacid=23162573 polypeptide=Lus10035057 locus=Lus10035057.g ID=Lus10035057.BGIv1.0 annot-version=v1.0 ATGTTTCATGGAGTCACAGCTCGTGGCCGCTTTTCTTTACCAGCTCCAGCAATGCCTCATGATCGTAACTGGGCGCCAACGCATGCTATATTGGCAACAC CATTGCTTATTGCATTTGAACTTCTCCTTTGCATACACTTGGAAGGCCGTTATGCTGTGGACTTGAAGATTGTCTTCATGCCATTGATAGCATTCGAAAT GACCATTTTAATCGATAACATCAGCATGTGTAGAGCTCTTATGCCGGGTGATGAGGAAAACATGAGTGATGAGCAAATATGGGAGACCCTTCCTTACTTC TGGGTTGCAATATCAATGGTCTTCTTCATTGCCGCAACAGTATTTACTCTCATGAAGTTATGTGGTGACGTGGCAGCTTTGGGTTGGTGGGATTTGTTTA TCAACTATGGTATTGCACAGTGCTTTGCTTTCCTGGTCTGTACAAAGTGGTATAACCCATTGATTCATGATCATTCCTACACCGAAGGGTCTAGTTCATC TTCAACGACTGTCAGATACCTCGACTGGAATAGGGGCCTAATTATTTCTTCAGATGAAGATCCAAGGAACATCAGAATGTGCAACCTGCAAGATATCGGT GGTCATTTTATGAAAATTCCTCTTATCGTTTTCCAGATCATGCTCTTCATGCGCTTGGAGGGAACACCTGCCGGTGCTAGACACATTCCAATTCCTTGTC TTTTTGCTCCACTATTCATGATACAAGGGGCTGGAGTACTGTTTGCTGCCTATAGATTGGTTGAGAAAATAGTCCTTTTGCTAAGTAGTGGAGCTTGCAC TGGTAGCTCCTTCTACCTTGTGGCAAAAGCCAAGGAATTTCTTGGATTCCTGCGGCATGGATCAAGGTTACTTGGTTGGTGGTCAATTGATGAAGGAAGC AGAGAGGAGCAAGCTAGACTCTATCATGGAAGCACTTCTAGCTACAATACATTTTCTCCAGACTGTGTCAGGAAGATGCTGAAATCTGAACTTGTCGACG AGATATGGAAACTACAAGCTGTACTTAGCGAGCAAATGGACATATCAAAGTGTAGCCAAGAGGAATATGAAAGATTACAGAATGAAAAGATCTTGTGTAG AATATGCTTTGAGGAACAGATTAACGTAGTCATTCTTCCTTGTAGGCATCATGCCCTCTGCAGTACATGCTGCGAGAAGTGCAAGAAGTGTCCAATATGC CGGGTTGTTATCGAAGAGCGTTTGCCTGTATGTGACGTGTAA
AA sequence Show only first row Show all	>Lus10035057 pacid=23162573 polypeptide=Lus10035057 locus=Lus10035057.g ID=Lus10035057.BGIv1.0 annot-version=v1.0 MFHGVTARGRFSLPAPAMPHDRNWAPTHAILATPLLIAFELLLCIHLEGRYAVDLKIVFMPLIAFEMTILIDNISMCRALMPGDEENMSDEQIWETLPYF WVAISMVFFIAATVFTLMKLCGDVAALGWWDLFINYGIAQCFAFLVCTKWYNPLIHDHSYTEGSSSSSTTVRYLDWNRGLIISSDEDPRNIRMCNLQDIG GHFMKIPLIVFQIMLFMRLEGTPAGARHIPIPCLFAPLFMIQGAGVLFAAYRLVEKIVLLLSSGACTGSSFYLVAKAKEFLGFLRHGSRLLGWWSIDEGS REEQARLYHGSTSSYNTFSPDCVRKMLKSELVDEIWKLQAVLSEQMDISKCSQEEYERLQNEKILCRICFEEQINVVILPCRHHALCSTCCEKCKKCPIC RVVIEERLPVCDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68820			Transmembrane Fragile-X-F-asso...		Lus10035057 [exp]	0	1
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Lus10005854 [exp]	2.8	0.9451
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10036618 [exp]	4.2	0.9425
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10035873 [exp]	6.2	0.9606
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	7.5	0.9527
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	12.4	0.9386
AT4G12840			Protein of unknown function (D...		Lus10041107 [exp]	12.6	0.9342
AT1G44770			unknown protein		Lus10034500 [exp]	18.3	0.9426
AT5G41810			unknown protein		Lus10003901 [exp]	18.7	0.9479
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	19.7	0.9443
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10040044 [exp]	21.2	0.9391

Compare expression of checked genes

Lus10035057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.