Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75290 212 / 1e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G39230 207 / 5e-65 NmrA-like negative transcriptional regulator family protein (.1) AT1G75280 198 / 3e-61 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 188 / 3e-57 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 182 / 5e-55 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 181 / 1e-54 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 173 / 2e-51 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 151 / 6e-43 ATPRR2 pinoresinol reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032470 [exp] 343 / 8e-117 AT1G75290 226 / 2e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021709 [exp] 242 / 8e-80 AT1G75290 83 / 6e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040442 [exp] 222 / 2e-70 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 220 / 2e-69 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 216 / 5e-68 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 220 / 8e-68 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 212 / 2e-66 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 209 / 2e-65 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 182 / 1e-55 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G129800 [exp] 428 / 1e-150 AT1G75290 241 / 2e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G116500 [exp] 427 / 1e-150 AT1G75290 242 / 3e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G050200 [exp] 382 / 8e-133 AT1G75290 257 / 6e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G118100 [exp] 213 / 8e-67 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 205 / 7e-64 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 202 / 1e-62 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 192 / 6e-59 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 190 / 4e-58 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 187 / 8e-57 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 187 / 1e-56 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10035058 pacid=23162441 polypeptide=Lus10035058 locus=Lus10035058.g ID=Lus10035058.BGIv1.0 annot-version=v1.0 ATGGCTACCATATCTAACTCGAAACCAACCATCAAGAGTCCGGTCTTGATCGTTGGCGCCACCGGTCTAATCGGCCGATTCGTAGCAGAGGCAAGTCTCG ACTCCGGCCGACCCATCTACCTTCTCACACGCAACTCAAGCTCCTCCGTCAGCCCTCCAAACACTCAAGGTTCAATATCCGACAAGGAAAGCATGGAGAC CATCCTGAAAGACAACAAAATTGAGGGTGTGATATCAATCGTAGGTGGTCGGAATTTGCTAGACCAGCTTACTCTGGTAGAGGCCATTAAATCCGTTGGA ACCGTTAAGAGGTTTCTGCCATCAGAATTTGGGCACGACGTGGACAGAGCAGATCCTGTGGAGCCAGGCCTAGCCATGTACCTGGAGAAGAGGCAAGTCA GGCGTTCGATCGAGCAAAACGACATCCCGTACACTTACATTTGCTGCAATTCTATAGCTTCTTGGCCTTACTACGACAATACACACCCTTCAGACGTCCC TCCTCCCGTTGACCACCTTCCCATCTACGCCGACGGCTCCATCAAAGCTTACTTCGTCACGGGACCAGACATTGGCAAGTTCACCATCAAGACTCTCGAC GATGATCGCACCATCAACAAGTCGGTCCATTTTCGACCGGATGTGAACTACTACAACATGAACGAGCTGGCTTCGCTGTGGGAGAAGAAGATAGGAAGGA GCATCCCTCGAGTTACTGTGACCGAAAGCGACCTTCTTGCTGTTGCTGCTGGTATAACTTGGATTCAGACTAGTAAACTCTCTCTCTATAGCTGTTGGTG TGTTGTGATCACCGGAGTTCATATCTGTGAATGGTTTGTGACAGAGAATCGAATTCCGGAGAGCATTGTGGCATCTTTCACCCATGACATATTCGTGAAG GGCTGCCAATCTAATTTCGAGATCAATGGAGTCAACGATCTGGAAATCAGTGCTCTGTACCCGGATGAAGCTTTCAAGACGGTTGATCAAGTGTTCAGTG ACTTTGCTCTCACAGTCCATCAGCAATAA
AA sequence Show only first row Show all	>Lus10035058 pacid=23162441 polypeptide=Lus10035058 locus=Lus10035058.g ID=Lus10035058.BGIv1.0 annot-version=v1.0 MATISNSKPTIKSPVLIVGATGLIGRFVAEASLDSGRPIYLLTRNSSSSVSPPNTQGSISDKESMETILKDNKIEGVISIVGGRNLLDQLTLVEAIKSVG TVKRFLPSEFGHDVDRADPVEPGLAMYLEKRQVRRSIEQNDIPYTYICCNSIASWPYYDNTHPSDVPPPVDHLPIYADGSIKAYFVTGPDIGKFTIKTLD DDRTINKSVHFRPDVNYYNMNELASLWEKKIGRSIPRVTVTESDLLAVAAGITWIQTSKLSLYSCWCVVITGVHICEWFVTENRIPESIVASFTHDIFVK GCQSNFEINGVNDLEISALYPDEAFKTVDQVFSDFALTVHQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10035058 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	4.5	1.0000
					Lus10003536 [exp]	7.3	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	7.7	1.0000
					Lus10022518 [exp]	9.2	1.0000
					Lus10011078 [exp]	9.2	1.0000
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Lus10038895 [exp]	9.4	0.9284
					Lus10011832 [exp]	10.0	1.0000
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015750 [exp]	12.6	1.0000
AT3G58150			Optic atrophy 3 protein (OPA3)...		Lus10039862 [exp]	12.7	1.0000
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10032879 [exp]	13.4	1.0000

Compare expression of checked genes

Lus10035058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.