Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23880 1143 / 0 ATCPSF100, EMB1265, ESP5, CPSF100 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) AT1G61010 128 / 2e-30 CPSF73-I cleavage and polyadenylation specificity factor 73-I (.1.2.3) AT2G01730 115 / 1e-26 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021705 [exp] 1424 / 0 AT5G23880 1202 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10035763 [exp] 123 / 2e-29 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10037338 [exp] 120 / 1e-28 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10015460 [exp] 107 / 7e-24 AT1G61010 940 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Lus10040483 [exp] 50 / 7e-06 AT3G07530 548 / 0.0 unknown protein Lus10011289 [exp] 48 / 3e-05 AT3G07530 557 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G231800 [exp] 1187 / 0 AT5G23880 1172 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Potri.017G076000 [exp] 125 / 1e-29 AT1G61010 1236 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.010G106200 [exp] 125 / 2e-29 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Potri.017G076132 [exp] 122 / 1e-28 AT1G61010 1237 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076300 [exp] 116 / 8e-27 AT1G61010 1093 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0398 [flax] [poplar] RMMBL_DRMBL PF07521 [flax] [poplar] RMMBL Zn-dependent metallo-hydrolase RNA specificity domain CL0023 [flax] [poplar] P-loop_NTPase PF10996 [flax] [poplar] Beta-Casp Beta-Casp domain
Representative CDS sequence Show only first row Show all	>Lus10035061 pacid=23162417 polypeptide=Lus10035061 locus=Lus10035061.g ID=Lus10035061.BGIv1.0 annot-version=v1.0 ATGGGGACTTCTGTGCAGGTCACACCGCTTTGTGGAGTGTACAATGAGAACCCATTATCATACTTAGTCTCCATCGATGGCTTTAATTTCTTGATTGATT GCGGTTGGAATGATCACTTTGATCCCTCACTTCTCGAGCCCCTCTCCAGAGTAGCTTCGAAAATAGATGCAGTTTTGTTGTCATATCCGGATACACTTCA TTTGGGTGGATTGGCTTATGCCATGCGTCATCTTGGACTCTCAGCTCCAGTTTATTCGACCGAGCCAGTTTTTAGATTAGGCTTACTCACTATGTACGAT CAATATCTATCTCGCAAGGCTGTTTCAGACTTTGATCTTTTTACGCTGGATGATGTCGATTCAGCTTTCCTAAACATTACCAGGCTTGCTTACTCACAGA ATCACCTTCTTTCTGGTAAGGGTGAAGGTATTGTTATTGCACCTCATGTGGCTGGTCATCTCCTCGGAGGGACTGTATGGAAGATAACAAAGGATGGAGA AGATGTTGTGTATGGTGTTGACTTCAACCATCGTAAAGAAAAGCATTTGAATGGAATCGTTGCAGAGTCTTTTGTCCGTCCTGCTGTTTTAATAACTGAT GCTTATAATGCTTTGAGTAATCAACTTCCCAGACAACAAAGAGACAGAATATTTTTAGAGCGAATTGTCAGGACATTAGAAGCAGGTGGAAATGTATTAC TACCTGTTGACTCTGCTGGACGAGCTTTGGAACTTATCCTCATACTAGAAGAGTTCTGGAGACAACGTGATTTACCATTCGACATTTTCTTTCTTACATA TGTTGCATCAAGCACTATTGACTATGTCAAGAGTTTCTTGGAGTGGATGGGTGATTCAATTGCCAAGTCATTTGAGGCTACACGTAACAATGCTTTTCTT TTGAAGCATGTGAAACTTCTAATCAGCAAGATGGACCTTGATAATGCTCCAAACAGTCCAAAGGTAGTTCTTGCCTCAATGGCAAGCTTGGAGGCAGGAT TTTCCCATGATATATTTGTTGAATGGGCATCTGATGCCAGGAACTTAGTGCTTTTCACTGAAAGAGGCCAGTTTGGGACCTTGGCTCGCATGCTTCAGTC AGATCCACCTCCAAAGGCTGTTAAAGTCACTATGTCAGAGAGGTTTCCTTTAGTTGGAGATGAATTAGTTGCCTATGAAGAAGAGCAAAAGCGATTGAAG AAGGAAGAGGAGCTGAAAGCTAGCTTCTTGAAACAAGAGGAATCGAGGGCATCTCATCGGCCTGATAATAGTGTCAGTGATCCAATGGTCACTGATACAA GCAGTACACACGCTCCACCAGATGTGGTTGGTTCTCATGGAAGTAGATATCGAGACATACTCATTGATGGATTTGTTCCAGCAGCGACTAGTGTGGCACC AATGTTCCCATTTTATGAAAACAACACTGAATGGGATGATTTTGGTGAAATCATAAATCCTGATGATTATGTAATCAAAGATGATGGCATGGACCATGCT GCTTTGCACGTTGGTGGAGAGATTGATGGAAAACTAGACGAAGCCGCTGCTAATTTTATTCTTGATACAAAACCGTCGAAAGTTGTTTCCCGTGAACTGA CTGTTCAAGTGAAATCTTCATTGATATACATGGATTTCGAGGGACGTTCTGATGGACGCTCAATTAAATCAATCATTGCTCGTGTGGCTCCTCTGAAACT TGTTCAAGTGAAATCTTCATTGATATACATGGATTTCGAGGGACGTTCTGATGGACGCTCAATTAAATCAATCATTGCTCGTGTGGCTCCTCTGAAACTT GTTTTGGTGCATGGATCAGCTGAGGCCACCGAGCATTTGAAGCAGCACTGCTTAAACCATGTCTGTGCACATGTTTATGCTCCTCAAATTGAAGAGACAG TTGACGTAACCTCAGATCTGTGTGCTTATAAGGTGCAACTTTCAGAGCAGCTCATGAGTAATGTTCTCTTCAAGAAGATGGGAGAATATGAAGTAGCTTG GATTGATGCCAAAGTAGGGAAGACCGAGAACGAGATGCTCTCATTACTGCCTGTGTCGACTACTCCTCCGCCACATAAATCAGTCCTTGTTGGTGATCTG AAAATGGCTGATCTCAAACAGTTCCTTGCCGGCAAGGGTGTTCAGGTGGAATTTGCGGGTGGAGGTGCATTACGTTGCGGAGAGTATGTGACACTCCGAA AAGTTGGAGTTGCCAGCCAAAAGGCAGGTGTATCTGGAACACAGCAGATAATAATAGAAGGTCCGTTATGTGAGGATTACTACAAGATTCGGGAGCACCT CTATTCACAGTTTTATCTAGTGTAG
AA sequence Show only first row Show all	>Lus10035061 pacid=23162417 polypeptide=Lus10035061 locus=Lus10035061.g ID=Lus10035061.BGIv1.0 annot-version=v1.0 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLEPLSRVASKIDAVLLSYPDTLHLGGLAYAMRHLGLSAPVYSTEPVFRLGLLTMYD QYLSRKAVSDFDLFTLDDVDSAFLNITRLAYSQNHLLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYGVDFNHRKEKHLNGIVAESFVRPAVLITD AYNALSNQLPRQQRDRIFLERIVRTLEAGGNVLLPVDSAGRALELILILEEFWRQRDLPFDIFFLTYVASSTIDYVKSFLEWMGDSIAKSFEATRNNAFL LKHVKLLISKMDLDNAPNSPKVVLASMASLEAGFSHDIFVEWASDARNLVLFTERGQFGTLARMLQSDPPPKAVKVTMSERFPLVGDELVAYEEEQKRLK KEEELKASFLKQEESRASHRPDNSVSDPMVTDTSSTHAPPDVVGSHGSRYRDILIDGFVPAATSVAPMFPFYENNTEWDDFGEIINPDDYVIKDDGMDHA ALHVGGEIDGKLDEAAANFILDTKPSKVVSRELTVQVKSSLIYMDFEGRSDGRSIKSIIARVAPLKLVQVKSSLIYMDFEGRSDGRSIKSIIARVAPLKL VLVHGSAEATEHLKQHCLNHVCAHVYAPQIEETVDVTSDLCAYKVQLSEQLMSNVLFKKMGEYEVAWIDAKVGKTENEMLSLLPVSTTPPPHKSVLVGDL KMADLKQFLAGKGVQVEFAGGGALRCGEYVTLRKVGVASQKAGVSGTQQIIIEGPLCEDYYKIREHLYSQFYLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	0	1
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10007337 [exp]	1.4	0.9438
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	1.4	0.9490
AT5G56900	C3HZnF		CwfJ-like family protein / zin...		Lus10021589 [exp]	1.7	0.9341
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	2.4	0.9301
AT1G30240			unknown protein		Lus10014364 [exp]	3.5	0.9323
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	7.0	0.9252
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	7.4	0.9316
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	7.5	0.9249
AT5G45400		ATRPA70C	Replication factor-A protein 1...		Lus10023805 [exp]	8.1	0.8845
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10008728 [exp]	9.2	0.9113

Compare expression of checked genes

Lus10035061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.