Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47090 350 / 2e-121 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035047 [exp] 544 / 0 AT5G47090 361 / 1e-125 unknown protein Lus10021704 [exp] 293 / 3e-100 AT5G47090 189 / 1e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G149800 [exp] 371 / 4e-129 AT5G47090 369 / 3e-128 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09747 [flax] [poplar] DUF2052 Coiled-coil domain containing protein (DUF2052)
Representative CDS sequence Show only first row Show all	>Lus10035063 pacid=23162538 polypeptide=Lus10035063 locus=Lus10035063.g ID=Lus10035063.BGIv1.0 annot-version=v1.0 ATGGAATCAGCAAAAGGAGACAAGATTCTGGGAAAGGTAATCAAAGAAGCAGCCATGGAGAGCATAACGATGAGGCTCTCCTCGGTAGACAACCTCTACT TCCCTCGTTCTCTACAGCTTCACGCGGCTGATCCGTCCCACCGCAAGTCTCTCCTGCTTGACCTTCTCTCCCGCGACCCCGCCGTCTTCCTAGAGCGGTA CGGAGGGCAGTTGACTTCTAATGAGCTTCATGAGTTTGATACTCTTGGTGACGATTACGAAATAAAATGGCACCTAAAGAATATCAGATGCAAATTGAGT CCAACTGACGAAGATCTGCGATCAAAGTCAGTTGCAGCAAAGAACCAGAGGCATGCGTACTTGAATAAACTGATAGGCGACGGTAGCTATTTCTCTGAAG ACGCAATGAGGCACAGGGAGCCATATTTGCATCATGAATTTGTCGGCAAGTTTCAAGATCTAAGTGCAAGGACCATGGCAAAGCCAGGGGAACGGTGGTC CGAGACTTTGATTAGGAGAGCTGAGGAAGCGATACTGGTGTCAAAGATTCGGGAAGAGCAGCAGAGACTAGGTGTCTCGGAGAGTGAATGGGTTGGTGGT TATGGAGAAAGCCAACAGCAGGATGAAGAGGAGGAGGAGGAAGAAGAAGTAGAGGAGGACGATGATGATGATGAAGAAAATGCAATGAAGGTTCAAATTA ACGTCGAGGGAAGTGCTCCGTCAACCACTGAACAGCATGACAAGGAAGAAACTTTATCAGCTGAGGAGATGGAAGATAGGATGGACCAATTTACTGCGAT AATGCACCAGAAATTCCTCTCTGGTGAAGACGATGAGAACTTTGATTATGCAAAAATCGACGAGGATGAGACGTTGGATGATCATTGGTTCGAGGACATA ACTCGTGATGCAGAGGATAAGTACTTCGCAGAGGACGACTGA
AA sequence Show only first row Show all	>Lus10035063 pacid=23162538 polypeptide=Lus10035063 locus=Lus10035063.g ID=Lus10035063.BGIv1.0 annot-version=v1.0 MESAKGDKILGKVIKEAAMESITMRLSSVDNLYFPRSLQLHAADPSHRKSLLLDLLSRDPAVFLERYGGQLTSNELHEFDTLGDDYEIKWHLKNIRCKLS PTDEDLRSKSVAAKNQRHAYLNKLIGDGSYFSEDAMRHREPYLHHEFVGKFQDLSARTMAKPGERWSETLIRRAEEAILVSKIREEQQRLGVSESEWVGG YGESQQQDEEEEEEEEVEEDDDDDEENAMKVQINVEGSAPSTTEQHDKEETLSAEEMEDRMDQFTAIMHQKFLSGEDDENFDYAKIDEDETLDDHWFEDI TRDAEDKYFAEDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47090			unknown protein		Lus10035063 [exp]	0	1
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000285 [exp]	3.7	0.8978
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10022626 [exp]	6.7	0.8943
AT2G20410			RNA-binding ASCH domain protei...		Lus10006580 [exp]	8.2	0.8802
AT3G52220			unknown protein		Lus10039101 [exp]	13.7	0.8973
AT4G22740			glycine-rich protein (.1.2)		Lus10024563 [exp]	14.3	0.8821
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	15.1	0.9036
AT2G32090			Lactoylglutathione lyase / gly...		Lus10010552 [exp]	18.5	0.8909
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10024082 [exp]	19.6	0.8601
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10027186 [exp]	21.4	0.8965
AT2G16790			P-loop containing nucleoside t...		Lus10037373 [exp]	22.1	0.8458

Compare expression of checked genes

Lus10035063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.