Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26120 575 / 0 ICME-LIKE1 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) AT5G15860 532 / 0 ICME, ATPCME Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) AT3G02410 526 / 0 ICME-LIKE2 Isoprenylcysteine methylesterase-like 2, alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017889 [exp] 898 / 0 AT1G26120 608 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10034399 [exp] 657 / 0 AT5G15860 561 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10019156 [exp] 653 / 0 AT5G15860 558 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10034083 [exp] 514 / 3e-180 AT5G15860 569 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10003065 [exp] 498 / 2e-173 AT5G15860 554 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10002907 [exp] 45 / 7e-05 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10002019 [exp] 43 / 0.0004 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132200 [exp] 615 / 0 AT1G26120 578 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.017G110700 [exp] 557 / 0 AT5G15860 541 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.004G104800 [exp] 555 / 0 AT5G15860 547 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.009G104000 [exp] 52 / 4e-07 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 52 / 6e-07 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 45 / 5e-05 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.004G142400 [exp] 43 / 0.0004 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466200 [exp] 43 / 0.0005 AT2G45600 330 / 1e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466166 [exp] 42 / 0.0007 AT2G45600 335 / 5e-115 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10035064 pacid=23162474 polypeptide=Lus10035064 locus=Lus10035064.g ID=Lus10035064.BGIv1.0 annot-version=v1.0 ATGCCGTCGTCCCAAATTCTCCCTGTCACCACAATCAATCACCACCACCACCTGCACGAATCCCCCAAATTAGGGCATCATCATCATCATTCCCCGGCAA TCTCCCATACTTCATTGCTCATCAACGTCGACCGAGGGGAGAAACAACAACCAGAACAAGAAGGAATGGTGATGAATCTCGTACTGGACGACCCATCCAC TCGTCTCCTGATCGCCTCCTCTCCTCCGCCGTTGTTCTCCGAAAACAATAGGCCTCTGCTGTCTCGGAATGCCAGCTTCTCAGGTATTTCTTCTGCCAGA AGTAGTAGTAGCAGCAGTAGCAGCAGCAGCAGCAGTAGCGAAGGAGTTGGAGGAGGTTTCTTCAAGTTTTGTGATCCGAAGAAGAAGAATAGGCGTCGAC GAACTGCTAGCGAGACTTGTCTGCTTTCCTCAATTTCTTTGTCGGAGGTGGATGACGGAAGCCGGCGTCAGCAGCAGCAGGAGGAGTCGTTGAGCCGTGA AGTTGGTCATGCTGCTGCGGAGACATTTCTGCTTACTAGATTGAGCTTGCAGCTCTTGACTTATCTAGGGGTAGGTTACAGATGGGTTGTGAGATTTCTT GCTCTTGGTTTCTACTCTTTGATGCTTCTCCCTGGTTTCATTCAAGTTGGATATTATTATTTTTTCTCTAAGCATGTCATCAGGAGTGTAGTTTACGGCG ATCAACCGAGAAATAGGCTTGATCTGTACTTGCCTAAAAACCTTGATGGTCCAAAGCCAGTTGTTGCGTTTGTAACTGGTGGTGCCTGGATAATTGGGTA CAAAGCTTGGGGTTCTCTACTAGGATGGCAACTATCGGAAAGAGACATCATAGTAGCTTGCATAGATTATAGGAACTTCCCTCAGGGAACAATGAGTGAC ATGGTGCAGGATGCCTGTCAAGGCATCTCATTTGTATGCAAAAATATAGCGGAATATGGAGGTGATCCAAATAGGATTTATTTGATGGGCCAATCAGCTG GAGCACACATTGCTGGTTGCGCACTGGTTGAACAAGCAATTAAAGAAGCTGGTGTAGGAGAGAACGTTACCTGGAGTGTTTCCCAGATAAAGGCGTACTT CGGTTTATCGGGAGGGTATAACTTGTTTAACCTAGTAGATTACTTCCATAGTCGAGGTCTGTACCGATCCATATTCTTGAGCATAATGGAAGGTGAAGAG TCCTTAAGACGGTTTTCTCCTGAAGTACTTGCAGAGGATCCAACCTTGAGAAATGCAGTTTCACTCCTCCCTCCAATTGTTCTTTTTCACGGCACTGCAG ATTATTCAATCCCTTCAGAGGCCAGCACAAGTTTTGCTGAGACGCTCAAGAGATCAGGAGTAAGGGCAGAGGCAATTACATATGAAGGCAAGACTCATAC AGATTTGTTCCTTCAGGATCCAATGAGAGGTGGGAAAGATCAAATGTTTGAGGATTTAGTTTCCATAATTCATTCCGGTGATCCTGAGGCTGAAGCCAAA GACAAAGTGGCTCCTCCGAGACGACGCCTTGTTCCTGAGTTCATGTTGCAGTTAGCTCGCAGAGTCAGCCCCTTTTAG
AA sequence Show only first row Show all	>Lus10035064 pacid=23162474 polypeptide=Lus10035064 locus=Lus10035064.g ID=Lus10035064.BGIv1.0 annot-version=v1.0 MPSSQILPVTTINHHHHLHESPKLGHHHHHSPAISHTSLLINVDRGEKQQPEQEGMVMNLVLDDPSTRLLIASSPPPLFSENNRPLLSRNASFSGISSAR SSSSSSSSSSSSSEGVGGGFFKFCDPKKKNRRRRTASETCLLSSISLSEVDDGSRRQQQQEESLSREVGHAAAETFLLTRLSLQLLTYLGVGYRWVVRFL ALGFYSLMLLPGFIQVGYYYFFSKHVIRSVVYGDQPRNRLDLYLPKNLDGPKPVVAFVTGGAWIIGYKAWGSLLGWQLSERDIIVACIDYRNFPQGTMSD MVQDACQGISFVCKNIAEYGGDPNRIYLMGQSAGAHIAGCALVEQAIKEAGVGENVTWSVSQIKAYFGLSGGYNLFNLVDYFHSRGLYRSIFLSIMEGEE SLRRFSPEVLAEDPTLRNAVSLLPPIVLFHGTADYSIPSEASTSFAETLKRSGVRAEAITYEGKTHTDLFLQDPMRGGKDQMFEDLVSIIHSGDPEAEAK DKVAPPRRRLVPEFMLQLARRVSPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10035064 [exp]	0	1
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10020121 [exp]	1.7	0.8778
AT5G19770		TUA3	tubulin alpha-3 (.1)		Lus10013765 [exp]	2.8	0.8803
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	3.7	0.8592
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	5.3	0.8769
AT3G21580		ABCI12	ATP-binding cassette I12, coba...		Lus10001117 [exp]	6.3	0.8319
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	8.8	0.8619
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10042499 [exp]	9.5	0.8579
AT1G51940			protein kinase family protein ...		Lus10006841 [exp]	9.5	0.8642
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10039169 [exp]	11.7	0.8583
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	11.8	0.8562

Compare expression of checked genes

Lus10035064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.