Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47990 513 / 3e-179 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) AT3G49660 76 / 4e-15 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G29830 70 / 4e-13 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 61 / 6e-10 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G15440 61 / 1e-09 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT5G50230 61 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 60 / 1e-09 RACK1B_AT receptor for activated C kinase 1B (.1) AT1G18080 59 / 2e-09 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 59 / 8e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G21390 58 / 1e-08 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017890 [exp] 919 / 0 AT2G47990 584 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10015340 [exp] 899 / 0 AT2G47990 594 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10008305 [exp] 525 / 0 AT2G47990 358 / 1e-121 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10021571 [exp] 69 / 1e-12 AT4G29830 543 / 0.0 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017159 [exp] 68 / 3e-12 AT4G29830 545 / 0.0 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 67 / 8e-12 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 64 / 7e-11 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020214 [exp] 61 / 2e-09 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10018458 [exp] 60 / 3e-09 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135600 [exp] 647 / 0 AT2G47990 614 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.002G213500 [exp] 638 / 0 AT2G47990 587 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.005G148500 [exp] 66 / 1e-11 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G145800 [exp] 64 / 4e-11 AT4G29830 486 / 2e-174 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 62 / 4e-10 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 62 / 4e-10 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 62 / 6e-10 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G079600 [exp] 61 / 1e-09 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.012G052700 [exp] 59 / 2e-09 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G041600 [exp] 59 / 2e-09 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF09384 [flax] [poplar] UTP15_C UTP15 C terminal
Representative CDS sequence Show only first row Show all	>Lus10035065 pacid=23162512 polypeptide=Lus10035065 locus=Lus10035065.g ID=Lus10035065.BGIv1.0 annot-version=v1.0 ATGGCTGATCAACAACAAACCGCCTCCATCTCCAAAACCTTCAGAGTGAAGCCAAAGCTTCAATCCAAACCTAGAAACCCATCCAAAACCCTAGAATCGA AATACTGGTCTTCTTTCAAAACAACCAAGATCGAGAATCTCCTCTCCTCAATCCCTTCAATCGAGTTCTCCCCCAGTTACCCCAAACCTAGCTCCTTCGC CGCCGCCAATCTCACATCTCTAACTTTCTTCTCCGGCCAAGACTTCTCCAAACTCTCCAACATTTCCGTCTCCCGTGACACCGTCACTTCCTGCTCGTTC CGCTCCGACGGCGCTCTCATGCCCGCCGCCGACCTCACAGGCGACATAAAGGTGTTCAACACCAAGACCAGGGCCCCACTCCGTCGTCTCCTCTCCCACA CTCGACCCGTCCGGTTTGTGAAATATCCATCTCTGGACAAGCTGCACTTGGTCTCCGGCGGCGACGATGCCATTGTCAAGTACTGGGACGTCAGCACTGA GAGCGTGGTCTGCAACTTGCAAGGCCACAAGGATTACGTGAGGTGCGGCGATTGCTCTCCCATCGATGGCATGTTTGCTACCGCAGGAGGCAACAGCGTA AAGATATGGGACGTCACAGGCGGAGGGAGGATGGTGCATTCGATGGAGAGCCACAACAAGACTGTAACTTCAATTTGCTTGGGAATGATTGGAGGAGAAT ACAGAATACTGAGCGTAGGTTTAGATGGGTACATGAAGGTGTTCGATTATGCAAAAATGAAGATAACTCATTCAATGAGGTACCCTGCTCCGCTAATGTC GATAGCTGTGTCGCCCGATGGGAAAAGGAGGGCAATTGGGACTTCGAATGGGATGATATTTGCAGGGAAGAGGAAAGTTAAGAAGGATGAGGATGGGGTG GAAGAGGGTTCGGAATATGGGATTCTGAAGGGATTGGGCAGTGGAGGAGAGATGAGGAGGGTGTTAAGGCCAACGAATTTCAGGTACTTCCAGAGAGGCC AAGGAGAGAAGGTTAATGAAGGGGACTATTTGGTGAGCAGGAAGAAGAAGGTGAAGTTGGCAGAGCATGATAAGCTGCTTAACAAGTTCAGACACAAAGA GGCGCTTGTATCTGTACTTGGGAGTAAGGATCCGGAGAATGTGGTTGCGGTTATGGAGGAATTGGTGGCACGAAGGAAGCTCATCAAGTGTGTGATGAAT CTAGAGGAAGAAGAGCTTGTGTTGCTGCTTAGTTTCCTACACAGGTATGCAACCATGCCACGGCATTCGCGACTGCTGATGGGTTTGACAAGGAAGGTTC TGGAGTTGAGGACTGAAGATATCAAAGCTTCGGATTCGTTGAAGCTTTCTATTAGGAACCTTAAGAGCTCGCTCGATGCCGAGATCAGGATACAGCAGTC GTTGCAAGAGATGCAGGGTATCATTTCTCCTCTCTTGAGAATTGCTGGCAGAAAATAG
AA sequence Show only first row Show all	>Lus10035065 pacid=23162512 polypeptide=Lus10035065 locus=Lus10035065.g ID=Lus10035065.BGIv1.0 annot-version=v1.0 MADQQQTASISKTFRVKPKLQSKPRNPSKTLESKYWSSFKTTKIENLLSSIPSIEFSPSYPKPSSFAAANLTSLTFFSGQDFSKLSNISVSRDTVTSCSF RSDGALMPAADLTGDIKVFNTKTRAPLRRLLSHTRPVRFVKYPSLDKLHLVSGGDDAIVKYWDVSTESVVCNLQGHKDYVRCGDCSPIDGMFATAGGNSV KIWDVTGGGRMVHSMESHNKTVTSICLGMIGGEYRILSVGLDGYMKVFDYAKMKITHSMRYPAPLMSIAVSPDGKRRAIGTSNGMIFAGKRKVKKDEDGV EEGSEYGILKGLGSGGEMRRVLRPTNFRYFQRGQGEKVNEGDYLVSRKKKVKLAEHDKLLNKFRHKEALVSVLGSKDPENVVAVMEELVARRKLIKCVMN LEEEELVLLLSFLHRYATMPRHSRLLMGLTRKVLELRTEDIKASDSLKLSIRNLKSSLDAEIRIQQSLQEMQGIISPLLRIAGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10035065 [exp]	0	1
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10017890 [exp]	1.0	0.9420
AT3G22660			rRNA processing protein-relate...		Lus10031698 [exp]	1.4	0.8636
AT3G06200			P-loop containing nucleoside t...		Lus10021947 [exp]	3.0	0.8502
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10000599 [exp]	7.1	0.7849
AT1G14060			GCK domain-containing protein ...		Lus10030441 [exp]	7.5	0.7270
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031700 [exp]	10.2	0.7940
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10043322 [exp]	10.9	0.7948
AT3G06200			P-loop containing nucleoside t...		Lus10041236 [exp]	12.0	0.7929
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018394 [exp]	12.5	0.8249
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	13.0	0.7700

Compare expression of checked genes

Lus10035065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.