Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30600 884 / 0 signal recognition particle receptor alpha subunit family protein (.1) AT5G03940 115 / 7e-27 SRP54CP, CPSRP54, FFC SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) AT1G48900 112 / 3e-26 Signal recognition particle, SRP54 subunit protein (.1.2) AT1G15310 107 / 2e-24 SRP54-1, ATHSRP54A signal recognition particle 54 kDa subunit (.1) AT2G45770 96 / 5e-21 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) AT5G49500 92 / 1e-19 Signal recognition particle, SRP54 subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017891 [exp] 1095 / 0 AT4G30600 933 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Lus10029330 [exp] 111 / 6e-26 AT1G48900 816 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10017023 [exp] 112 / 1e-25 AT5G03940 892 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10016213 [exp] 110 / 2e-25 AT1G48900 890 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10021346 [exp] 109 / 6e-25 AT5G03940 903 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10041358 [exp] 95 / 1e-20 AT2G45770 583 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10036570 [exp] 76 / 3e-14 AT2G45770 564 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G105900 [exp] 924 / 0 AT4G30600 856 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.006G183600 [exp] 924 / 0 AT4G30600 869 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.001G253500 [exp] 112 / 3e-26 AT1G48900 882 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.016G112800 [exp] 111 / 7e-26 AT1G48900 887 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.016G078600 [exp] 111 / 1e-25 AT5G03940 928 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.006G211500 [exp] 109 / 8e-25 AT5G03940 859 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.014G078800 [exp] 91 / 1e-19 AT2G45770 593 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00448 [flax] [poplar] SRP54 SRP54-type protein, GTPase domain CL0431 [flax] [poplar] PF PF04086 [flax] [poplar] SRP-alpha_N Signal recognition particle, alpha subunit, N-terminal CL0431 [flax] [poplar] PF02881 [flax] [poplar] SRP54_N SRP54-type protein, helical bundle domain
Representative CDS sequence Show only first row Show all	>Lus10035066 pacid=23162446 polypeptide=Lus10035066 locus=Lus10035066.g ID=Lus10035066.BGIv1.0 annot-version=v1.0 ATGTTAGAGCAATTGCTCATATTTACAAGAGGAGGGTTGATCCTATGGACTTGTAAAGAGCTTGGAAACGCTCTCAAGGGATCACCAATTGATACCCTTA TCAGATCCTGCCTTTTGGAGGAAAGGTCTGGTGCAGAGTCCTACAACTATGATGCTCCAGGTGGTGCCTATACTCTGAAATGGACTTTCCACAATGAGCT CGGCCTTGTATTTGTCGCTGTGTATCAGCGGATACTTCGGCTGCTCTACGTGGATGAACTGCTTTCCACGATGAAGCGTGAATTCTGTGAGATATATGAT CCAAAGCGGGTGGACTACAATGACTTTGACGAGACTTTTAGGCAGCTTAGGAAAGAGGCTGAGGCCAGGGCAGAGGAGTTGAAGAAATCAAAGCAAGTCG GTAAGCCTGTGAATGATTCTAAGAAACAGGGGCGTATGAAAAAGGGTGCGACTGATGGAGGAAACCAAAAAAAAAGTGCTACAACTGGTGGAAGTGATGA TGATGATAATATGGCAGGCCATAAATTGGAGAATGGACACTCCAATGGTCATCACGTTGATAGTGATAGCTCTAAAGGATTAGCTGCTGTTAACGGTAAA GAAAATGCTAGTGTTAATGTTGGGGCATTTGATGTAAGTAAGCTCCAGAAGCTCAAGAACAAAGGAGGGAAGAAAAATGATACTGTTGTTAGTAATAGTA TGGGTTCCAAATTGGACCCAAAGAAAAAGGTTACAAAAAAGAATAGGACCTGGGACGATTCACCTTCACAGCAGCCGAAATTGGACTTCACTGATCCTGT AGAAAATGGAAACGAGAATATAGATATTGTGCCGGCTATCCAAGGAGAAAGCATGATGGACAAAGAAGAGATATTTAGCAGTGATAGTGAGGATGAAGAA GACGAAGAAGATGAAGTTGGCAAGGGAAGAGTGCCTGAATCGAAGAAGAAGGGTTGGTTTTCATCCATGTTCCAGAGCATTGCCGGAAAAGCAAATTTGG AGAAGTCAGATCTGGAACCAGCCTTAAAAGCTCTAAAGGACAGGCTTATGACCAAGAATGTGGCTGAAGAGATAGCTGAGAAGCTTTGTGAATCAGTTGC AGCTAGCTTGGAAGGTAAAAAGCATGCATCTTTCACAAGGATATCTTCGACTGTCCAGGCAGCTATGGAGGATGCCCTTGTTCGGATTCTGACCCCTAAA CGGTCTATTGACATATTGAGGGATGTCCATGCTTGTAAGGAACAAAGGAAGCCATATGTTGTTGTCTTTGTGGGTGTCAATGGGGTTGGAAAATCAACTA ATCTGGCTAAGGTTGCATATTGGCTTCAGCAGCATAACGTTAGTGTTATGATGGCTGCTTGTGATACATTCCGTTCTGGAGCTGTCGAGCAGCTGCGAAC TCATGCACGGAGACTTCAGATTCCTATATTTGAGAAGGGCTATGAAAAGGATCCTGCTGTAGTTGCAAAAGAAGCAATTCAGGAGGCCACTCGCAACGGC TCTGACGTTGTACTTGTTGACACAGCTGGCCGAATGCAGGATAATGAACCATTGATGAGGGCACTGTCTAAGCTTATTTACCTCAACAACCCTGATCTTG TTCTGTTTGTTGGGGAGGCACTGGTTGGAAATGACGCAGTTGATCAACTGTCAAAGTTTAATCAGAAACTGGCTGATCTGTCCCCTTCCCCAAATCCACG ACTTATCGACGGGATCCTGCTTACCAAGTTCGACACCATTGACGATAAGGTTGGAGCTGCACTTTCCATGGTGTACATCTCAGGAGCGCCAGTGATGTTT GTGGGTTGCGGACAGTCTTACACCGATCTGAAGAAGTTGAATGTGAAATCAATTGTGAAGACTCTTTTGAAATGA
AA sequence Show only first row Show all	>Lus10035066 pacid=23162446 polypeptide=Lus10035066 locus=Lus10035066.g ID=Lus10035066.BGIv1.0 annot-version=v1.0 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAESYNYDAPGGAYTLKWTFHNELGLVFVAVYQRILRLLYVDELLSTMKREFCEIYD PKRVDYNDFDETFRQLRKEAEARAEELKKSKQVGKPVNDSKKQGRMKKGATDGGNQKKSATTGGSDDDDNMAGHKLENGHSNGHHVDSDSSKGLAAVNGK ENASVNVGAFDVSKLQKLKNKGGKKNDTVVSNSMGSKLDPKKKVTKKNRTWDDSPSQQPKLDFTDPVENGNENIDIVPAIQGESMMDKEEIFSSDSEDEE DEEDEVGKGRVPESKKKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKHASFTRISSTVQAAMEDALVRILTPK RSIDILRDVHACKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNG SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSPSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMF VGCGQSYTDLKKLNVKSIVKTLLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	0	1
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	1.0	0.9830
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	2.0	0.9766
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10026742 [exp]	2.4	0.9695
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Lus10027021 [exp]	3.3	0.9606
AT5G15270			RNA-binding KH domain-containi...		Lus10036767 [exp]	4.4	0.9529
					Lus10036131 [exp]	4.6	0.9524
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	5.9	0.9644
AT1G15530			Concanavalin A-like lectin pro...		Lus10019879 [exp]	6.0	0.9598
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10041148 [exp]	6.2	0.9453
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	7.2	0.9653

Compare expression of checked genes

Lus10035066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.