Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71260 270 / 2e-91 WHY2, ATWHY2 WHIRLY 2 (.1) AT1G14410 172 / 7e-53 WHY1, ATWHY1, PTAC1 A. THALIANA WHIRLY 1, ssDNA-binding transcriptional regulator (.1) AT2G02740 171 / 6e-52 WHY3, ATWHY3, PTAC11 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017892 [exp] 439 / 5e-158 AT1G71260 271 / 3e-92 WHIRLY 2 (.1) Lus10036723 [exp] 167 / 7e-51 AT1G14410 342 / 1e-119 A. THALIANA WHIRLY 1, ssDNA-binding transcriptional regulator (.1) Lus10037206 [exp] 108 / 2e-27 AT1G14410 227 / 1e-72 A. THALIANA WHIRLY 1, ssDNA-binding transcriptional regulator (.1) Lus10000805 [exp] 42 / 5e-05 AT1G27220 40 / 7e-05 paired amphipathic helix repeat-containing protein (.1) Lus10014532 [exp] 43 / 9e-05 AT1G23850 78 / 2e-16 unknown protein Lus10043127 [exp] 43 / 0.0002 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G048700 [exp] 286 / 1e-97 AT1G71260 283 / 5e-97 WHIRLY 2 (.1) Potri.008G149100 [exp] 156 / 2e-46 AT2G02740 321 / 4e-111 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2) Potri.010G092500 [exp] 119 / 6e-32 AT2G02740 208 / 1e-66 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0609 [flax] [poplar] sPC4_like PF08536 [flax] [poplar] Whirly Whirly transcription factor
Representative CDS sequence Show only first row Show all	>Lus10035067 pacid=23162353 polypeptide=Lus10035067 locus=Lus10035067.g ID=Lus10035067.BGIv1.0 annot-version=v1.0 ATGGAGAATGAGACGTTGTTTCTAATGATTTGGAATTGCAGCAAGCCATCATACTGTCAATGGCTTGGCTGCAGGAACTCTCTGTCTGGGAAACCGGGCG TTGGTAGCGATGCTCTTACTAGCCTCCAATCTCCCATTTCCACTACCGCCGCCGGAAATGACAATGCGGGCGATCGGATTTACGCTCCATTCTCGGTGTA CAAGGGCAAAGCTGCTCTCTCCGTCACGCCTATCCTCCCAACTTTCACCAAGTTGGATTCCGGGTCTCTCAAGGTCGGTCGCACTGGCACCATGATGATG ACCTTCATGCCTTCTATCGGAGAGCGCAAGTATGACTATGAGAAGAAACAGATGTTTGCTCTCTCGCCAACAGAGGTTGGTTCTCTCCTAAGTATGGGTC CTAAAGATTCTTCCGACTTCTTCCATGACCCCTCTATGAAATCGAGTAATGCAGGCCAGGTGAGGAAGTCCTTGTCAATCAAACCTCATGCTGATGGTAG TGGCTATTTCATTTCACTGAGTGTAGTCAACAACGTTCTCAAAACCAATGACCGCGTAACTGTTCCAATCACAACAGCTGAATTTGCGGTTTTGAAGACG GCTTGCAGTTTTGCATTGCCCCATATCATGGGTTGGGACCGGCTGACTAGTCAACAGCCACAGCAGCTAAGAGACAGATCTGGGTGTGTACCTGTGCGTG AGGCTGAGTGCATGGCTGTTTTGACAGCCTTGGAATGGATTCAGGATATGGGCTACGAGAAGGTGGAGGTGGAAACAGATAACAAGTGGGTGTTCTTGTT GCGTGACGAAATAGATTGA
AA sequence Show only first row Show all	>Lus10035067 pacid=23162353 polypeptide=Lus10035067 locus=Lus10035067.g ID=Lus10035067.BGIv1.0 annot-version=v1.0 MENETLFLMIWNCSKPSYCQWLGCRNSLSGKPGVGSDALTSLQSPISTTAAGNDNAGDRIYAPFSVYKGKAALSVTPILPTFTKLDSGSLKVGRTGTMMM TFMPSIGERKYDYEKKQMFALSPTEVGSLLSMGPKDSSDFFHDPSMKSSNAGQVRKSLSIKPHADGSGYFISLSVVNNVLKTNDRVTVPITTAEFAVLKT ACSFALPHIMGWDRLTSQQPQQLRDRSGCVPVREAECMAVLTALEWIQDMGYEKVEVETDNKWVFLLRDEID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10035067 [exp]	0	1
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	2.0	0.8586
AT2G01440			DEAD/DEAH box RNA helicase fam...		Lus10034589 [exp]	3.2	0.8523
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10029403 [exp]	8.8	0.7709
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10022701 [exp]	9.2	0.8085
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10019360 [exp]	9.3	0.8149
AT1G20890			unknown protein		Lus10005486 [exp]	9.4	0.8119
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10007420 [exp]	13.0	0.7832
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10010336 [exp]	13.6	0.7924
AT4G19010			AMP-dependent synthetase and l...		Lus10022542 [exp]	14.5	0.7781
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10040730 [exp]	22.4	0.7726

Compare expression of checked genes

Lus10035067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.