Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68710 1660 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 1655 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 1619 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT1G26130 1578 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G27870 1422 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1282 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 1281 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1278 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1266 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 946 / 0 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035069 [exp] 1920 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10019152 [exp] 1843 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 1412 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 1265 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 1261 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 1254 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 1197 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 1192 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10034404 [exp] 1044 / 0 AT3G25610 969 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058000 [exp] 1633 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 1602 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 1589 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 1404 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 1237 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 1229 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 1141 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 960 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 949 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 633 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10035068 pacid=23162566 polypeptide=Lus10035068 locus=Lus10035068.g ID=Lus10035068.BGIv1.0 annot-version=v1.0 ATGATTAAAGAAGGCATTGAAGATTGGCGCCGTAAACAGCAGGATATTGAGGTGAACAATAGGATTGTGAAAATACATCAAGGAGAAGGGAAGTTTACTC AAATAGAATGGAAGAATTTGAGAGTCGGAGATATAGTTAAGGTGGAGAAAGATGAATTCTTTCCCGCAGACTTAATTCTGTTATCTTCAAGTTATGAAGA TGGTGTTTGTTATGTTGAAACCATGAATTTGGATGGTGAGACCAACTTGAAACTGAGACAAGGACTTGAGACGACACTTTCAGTGTTAAATGATGATTCA GACTTCAAGAGCTTTAAATCTATGATAAAATGCGAAGACCCCAATGCTAATTTGTACACATTTGTTGGGAGTTTGGAGCATGGAGAGGAACAATATCCCC TTGCACCCCAACAACTTCTATTGAGAGATTCCAAGCTTAGGAACACAGAATATATTTTTGGTGCAGTTGTGTTCACTGGTCACGACACAAAGGTGATGCA GAATGCCACAGCTCCACCGTCAAAAAGAAGTAGGATTGAGAAGAAGATGGATCAAATCGTCTACTTCTTGTTTTGTGTTGTGTTTTTGATGGCGTTGGTT GGATCGATTTACTTCGGAATTTCAACCAAAGATGACTTGAAAGGTGGCAGAATGAAGAGATGGTATCTTAGACCAGATGATTCTGAAGTCTTCTTTGATC CCAAAAGGGCAGTAACTGCATCAATCTTTCATTTCTTGACTGCGATAATGTTATATGGTTACTTCATTCCAATCTCACTCTACGTTTCGATAGAGGTTGT CAAAGTTCTTCAGTGCATCTTCATCAATCAAGATATTCATATGTACTACGAGGAGAGTGACAAACCAGCTCATGCCCGGACCTCGAACTTGAATGAAGAA CTTGGGCAGGTTGATACAATACTTTCAGACAAAACCGGGACCTTGACCTGCAATTCTATGGAGTTCATCAAGTTTTCCGTGGCTGGTACTGCTTATGGCC ATGGTATAACAGAAGTTGAGAGAGCTATGGAAAGGAGGACAGGTAGTCCCTTATTAATCAATAGCATGGAAGAAGAAAAAAAGGATTTTACTAACAACAA CAACACAATCAAAGGCTTTAACTTTGAGGATAAAAGAATAAGTAATGGACAATGGGTACACGAGGCGAATGCAGGTACCATAGAAAAGTTCCTGAGATTG TTGGCTTTATGTCACACGGCCATTCCTGAAGTTGATGAAGATCAAGGGACAATCAATTATGAAGCTGAATCACCCGATGAAGCTGCATTTGTCATAGCTG CAAGGGAATTTGGTTTCGAGTTTTATAAACGAACTCAAACTAGCATTTCTGTGAGGGAGTTGGATATCCAATTACAGAAGAAGGTCGAAAGGGAGTATAC CCTTTTGAATATATTGGAGTTCAACAGCACTAGGAAAAGAATGTCTGTCATCGTAAGGGACGAGGAAGGGAAGATACAGTTGCTTTCAAAAGGAGCTGAC AGTGTAATGTTCGAAAGACTTGCCAAGGGTGGTAGGGAGTTTGAAGGTGATACCAGGAAACATGTAAATCAATATGCTGATGCAGGGCTAAGGACGTTAA TACTTGCTTATCGTGAGTTAGGTGAAGATGAATATACAGATTTCACTTCTAAGTTCAACACTGCAAAAAATTTGGTAATTGCAGATCGAGAAACGATGAT TGAAAAAGTGGCAGAGGATGTGGAGAAGGATTTAATACTCCTTGGTGCTACTGCTGTTGAGGACAAACTCCAAGATGGGGTTCCTGATTGCATTGATAAA CTTGCTCAAGCTGGAATCAAGATATGGGTTTTAACTGGTGACAAAATGGAAACTGCCATCAACATTGGTTTTGCTTGTAGTTTGCTTAGACAAGGGATGA AGCAGATTATAATCAATCTTGAATTACCAGAGCTTCAATCATTAGAAATTTCTGGTGACAAAGTTGCAATTAACAAGGTGTCAAAAGAGCACGTTCTGCG TCAAATTAATGAAGGTAAAGAACTAGCGTCTGCATCAGGAGGAAGCTCAAATGCATTTGCTTTGATAATTGATGGAAAATCGCTAACTTACGCACTGGAA AATGATGTAAAACACTTATTTCTGGATCTTTCTATGAGCTGTGCATCTGTCATTTGCTGCAGATCATCACCCAAACAAAAGGCACTGGTAACTAGATTAG TGAAAAATGGAACCGGAAAAACAACATTAGCAATTGGTGATGGTGCCAATGACGTTGGTATGCTTCAGGAAGCAGACATTGGAGTTGGAATCAGTGGTGT TGAAGGAATGCAGGCTGTCATGTCAAGTGACGTTGCAATTGCTCAATTTCGGTATTTGGAGCGTTTGCTACTTGTACATGGACATTGGTGTTACAGAAGA ATATCGGCAATGATTTGCTACTTCTTTTACAAGAATGTTACATTTGGAATCTCAGTGTTTTTGTACGAGGCATATGCATCATTTTCAGGACAGTCTGTAT ACAATGATTGGTTCCTCTCACTTTACAATGTCTTCTTTACATCACTTCCAGTGATTGCCATGGGCATTTTTGACCAGGATGTATCGTCACGCTGTGCTCT CAAGTTTCCATTGTTATATCAAGAAGGGGCGCAAAATGTACTCTTTAGCTGGCGGAGGATAATCACATGGATGATGAATGGTGTTTACAGTGCAGTAATG ATATTTTTCTTCTGCAAAAAAGCAATGGAGAGCCAAGCCTTCAACAAAGAAGGAATGATGGCAGGACGAGACATCCTAGGGGCGACAATGTATACTTGCA TAGTGTGGACTGTAAACCTGCAAATGGCGCTCTCCATAAACTACTTCACAGTGATACAACACATTTTGATATGGGGTTCCATCGCATTCTGGTACATTTT CCTCCTTATCTATGGATCCATGTCACCTGGATTCGCTGGTAATGCTTATAAGATCTTCATCGAAGCACTAGCCCCGTCAGCTTCATTCTGGATCATCACA CTGTTTGCGGTGATCTCGACGTTGATACCATACTTCGCCTTTTCAGCAATTCAAATGAGGCATTTCCCATTGTACCATCAGATGGTACAGTGGATAAGGC ATGAAGGGCAGTTGGAGGATCCTGAGTTCTGTGAGATGGTTCGACAGAGGTCGATTAGGGCAACCACAGTTGGTTTCACTGCTCGAGTAGCAGCAAAATC AAGTAGATCAAACAGTAGAGAGGAGAACCCATTATAA
AA sequence Show only first row Show all	>Lus10035068 pacid=23162566 polypeptide=Lus10035068 locus=Lus10035068.g ID=Lus10035068.BGIv1.0 annot-version=v1.0 MIKEGIEDWRRKQQDIEVNNRIVKIHQGEGKFTQIEWKNLRVGDIVKVEKDEFFPADLILLSSSYEDGVCYVETMNLDGETNLKLRQGLETTLSVLNDDS DFKSFKSMIKCEDPNANLYTFVGSLEHGEEQYPLAPQQLLLRDSKLRNTEYIFGAVVFTGHDTKVMQNATAPPSKRSRIEKKMDQIVYFLFCVVFLMALV GSIYFGISTKDDLKGGRMKRWYLRPDDSEVFFDPKRAVTASIFHFLTAIMLYGYFIPISLYVSIEVVKVLQCIFINQDIHMYYEESDKPAHARTSNLNEE LGQVDTILSDKTGTLTCNSMEFIKFSVAGTAYGHGITEVERAMERRTGSPLLINSMEEEKKDFTNNNNTIKGFNFEDKRISNGQWVHEANAGTIEKFLRL LALCHTAIPEVDEDQGTINYEAESPDEAAFVIAAREFGFEFYKRTQTSISVRELDIQLQKKVEREYTLLNILEFNSTRKRMSVIVRDEEGKIQLLSKGAD SVMFERLAKGGREFEGDTRKHVNQYADAGLRTLILAYRELGEDEYTDFTSKFNTAKNLVIADRETMIEKVAEDVEKDLILLGATAVEDKLQDGVPDCIDK LAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIINLELPELQSLEISGDKVAINKVSKEHVLRQINEGKELASASGGSSNAFALIIDGKSLTYALE NDVKHLFLDLSMSCASVICCRSSPKQKALVTRLVKNGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDVAIAQFRYLERLLLVHGHWCYRR ISAMICYFFYKNVTFGISVFLYEAYASFSGQSVYNDWFLSLYNVFFTSLPVIAMGIFDQDVSSRCALKFPLLYQEGAQNVLFSWRRIITWMMNGVYSAVM IFFFCKKAMESQAFNKEGMMAGRDILGATMYTCIVWTVNLQMALSINYFTVIQHILIWGSIAFWYIFLLIYGSMSPGFAGNAYKIFIEALAPSASFWIIT LFAVISTLIPYFAFSAIQMRHFPLYHQMVQWIRHEGQLEDPEFCEMVRQRSIRATTVGFTARVAAKSSRSNSREENPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	0	1
AT1G62560		FMOGS-OX3 ,FMO ...	flavin-monooxygenase glucosino...		Lus10024609 [exp]	1.0	0.9655
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10003136 [exp]	1.7	0.9577
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10036251 [exp]	2.8	0.9573
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10018263 [exp]	4.9	0.9564
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	5.4	0.9407
AT3G14470			NB-ARC domain-containing disea...		Lus10011278 [exp]	6.0	0.9554
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	6.3	0.9617
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000516 [exp]	6.3	0.9340
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	9.2	0.9572
AT5G65530			Protein kinase superfamily pro...		Lus10025713 [exp]	10.9	0.9260

Compare expression of checked genes

Lus10035068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.