Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25610 1782 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 1771 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 1727 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT1G26130 1688 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G27870 1534 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 1372 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1370 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1355 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1330 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 985 / 0 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019152 [exp] 1982 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1943 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 1542 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 1354 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 1352 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 1351 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 1312 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 1288 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10034404 [exp] 1021 / 0 AT3G25610 969 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058000 [exp] 1762 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 1712 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 1707 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 1502 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 1330 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 1316 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 1226 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 990 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 986 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 676 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10035069 pacid=23162535 polypeptide=Lus10035069 locus=Lus10035069.g ID=Lus10035069.BGIv1.0 annot-version=v1.0 ATGGGTAGAAAAAAGAGAAGGATACATGTGAAGCTGAGCAGATTATATACCTTTGGATGTGGGAGAGCATCCTTCAAAGAAGAAGAACATTCTCAAATTG GCGGGCCTGGGTTTTCTAGGATAGTCTTTGCTAATGAGCCTGATTGTTTTGAAGCTCAGATTAGAGATTATGGTGACAATTATGTCAGTACAACAAAATA CAACTTTGCAACTTTCTTGCCCAAATCCTTGTTTGAACAGTTCAGGAGGGTGGCCAATTTCTACTTTTTGATCACTGGGATCTTGTCCTTCACTCCGTTA GCTCCTTACAACGCCGTCAGCGCCATTATCCCTCTCATCATTGTTATTGCTGCCACCATGGTTAAAGAAGGCATCGAAGATTGGCGTCGCAAACAACAGG ATACTGAGGCAAACAATAGGGTGGTGAAAGTACATCACAAGGAAGGGGTGTTTATCCAAACAGAATGGAAGAAATTGAGGGTTGGAGATATAGTTAAGAT GGAGAAAGATGAATTCTTTCCCGCGGACTTAATTCTGTTATCTTCAAGTTATGAAGATGGTGCATGCTATGTGGAGACCACAAATTTGGATGGTGAGACC AACTTAAAGCTGAGACAAGCACTTGAGACGACACTTTCAGTATTAAATGAAGACTCAGACTTCAAGAAGTTTAAATCCATGATAAAATGTGAAGACCCCA ATGCTAATTTGTACACATTTGTTGGGAGTTTGGAACATGGAGAGGAACAATATCCCCTTGCACCTCAACAGCTTCTCTTGAGAGATTCTAAGCTCAGGAA TACAGAATATATTTATGGTGCAGTTGTGTTCACTGGTCATGACACAAAGGTGATGCAGAATTCCACATCCCCACCGTCGAAAAGAAGTAGGATTGAGAAG AAGATGGATCAGATCATCTACTTCTTGTTCGGTGCTGTGTTTTTTATGGCGTTGGTTGGATCTATTTACTTTGCAATTTCAACCAAAGATGACTTGAAAG ATGGTAGAATGAAGAGATGGTATCTTAGACCAGATGATTCTCTAGTCTTCTTTGATCCTAAAAGGGGAGTAACTGCAGGAGTCTTTCACTTCCTGACTGT AATAATGTTGTATAGTTACTTCATTCCTATCTCGCTCTACGTTTCAATAGAAATCGTCAAAGTTCTTCAGTGCATCTTCATCAATCAAGATATTCATATG TACTTTGAGGAGACTGACAAACCAGCTCATGCTCGAACCTCGAATTTGAATGAGGAACTTGGGCAGGTTGATACAATACTTTCTGACAAAACTGGAACTT TGACTTGCAATTCCATGGAGTTCATCAAATTTTCCGTGGCCGATACCTCTTATGGAAATGGTATAACAGAAGTTGAGAGAGCTATGTCAAGAAGCACAAA AAGAGGAAACAAGGATTATACTAACAACAACAACAACAACACGATCAAAGGCTTTAACTTTCAAGATAAAAGAATTATGAATGGACAATGGGTACACGAG GCTAATGCAAGTACCATACAAAATTTTCTGAGGTTATTGGCTGTATGTAACACGGCCATTCCCGAAGTTGATGAAGATCACGGTACAATCAACTACGAAG CCGAATCACCTGATGAAGCTGCATTTGTTATAGCTGCAAGAGAATTTGGTTTCGAGTTCTATAAACGAACTCAAACTAGCATTTCAGTGAGGGAGTTGGA TATGCATTCATGCAAGAAGTTTGAAAGGGAGTATACACTTTTAAATATATTGGAGTTCAACAGCACTAGGAAAAGAATGTCTGTGATTGTAAAGGACGAG GAAGGAAAGATATTGTTGCTTTCAAAAGGAGCTGACAGTGTAATGTTTGAAAGGCTTGGCAAGGATGGTAGGGAGTTTGAAGGTGTCACTAGGACACATG TAAATCAATATGCTGATGCAGGGTTAAGGACATTAATATTGGCCTACCGTGAATTATGTGAAGATGAATATATAGATTTCACTTCAAAATTCAATGCTGC AAAAAGTTCTGTAACTACAAATCGAGAAACGTTGATTGAAAAAGTAGCAGAGGATTTGGAGAAGGATTTAATACTCCTTGGTGCTACTGCTGTTGAGGAC AAACTCCAAAATGGGGTACCTCGCTGCATCGACAAGCTTGCTCAAGCTGGAATAAGGATATGGATTTTAACTGGTGACAAAATTGAAACTGCCATCAACA TTGGTTTGCTTAGACAAGGGATGAAGCAGATTATAATCAACCTTGAATTGCCAGAGCTACAATCATTAGAAATTGCTGGTGAAAAAATTGCAATTAACAA GGTGTCAAAAGAGCATGTTCAGCGTCAAATCAACGAAGGTAAAGCATTAGTGGCTGCATCAGGAGGAAGCTCTGATGCATTTGCTTTGATAATTGACGGA AAATCGCTAACTTATGCATTGGAAAATGATGTAAAGCACTTATTTCTAGAGCTTTCTATGAGTTGTGCATCTGTCATTTGTTGCAGATCATCGCCCAAAC AAAAAGCACTAGTAACTAGACTAGTGAAAAATGGAACTAGAAAAACAACATTAGCAATTGGTGATGGTGCCAATGATGTTGGCATGCTACAAGAAGCAGA CATTGGAGTTGGAATCAATGGTGTTGAAGGAATGCAGGCTGTCATGTCGAGTGACGTTGCAATTGCTCAATTTCGGTACTTGGAGCGTTTGCTACTTGTG CATGGACATTGGTGTTATAGAAGAGTATCAACAATGATTTGTTACTTCTTCTACAAGAATGTTACATTTGGAATCTCAGTGTTCTTGTACGAAGCATATG CATCATTTTCAGGACAATCTGCGTACAACGACTGGTTCCTCTCACTTTACAATGTTTTCTTCACATCATTTCCAGTGATTGCCTTGGGCGTCTTCGACCA GGATGTATCATCGCGTTGTGCACTCAAGTTTCCATTACTATACCAAGAAGGGGTACAAAATGTACTCTTCAGTTGGTGGAGGATAATCACATGGATTATA AATGGTGTTTACACTGCAATAATGATATTCTTCTTCTGCACAAAAGCAATGGAGAACCAAGCTTTCAACAAAGAGGGAATGACAACAGGACGAGACATCC TAGGGGCAACAATGTATACTTGCATAGTATGGGCTGTAAACTTGCAGATGGCACTCTCCATCAACTACTTCACAGTGATACAACACATTTTGATATGGGG TTCCATTGCATTCTGGTACATTTTCCTTCTGATCTACGGATCAATGTCTCCTGGATTTGCAGGGAATGCCTACATGATTTTCGTTGATGCACTGGCCCCA ACACCTTCATACTGGATCATCACGCTGTTCGCGGTGATCTCAACGTTGATACCATACTTTTGCTTTTCAACAATGCAAATGAGGTTCTTCCCGATGTATC ATCAGATAATACAGTGGATAAGGCATGAAGGGCGATCAGAGGATCTCGAGTTTTGTAACACGGTTCGACAGAGGTCGATTAGGCCAACCACGGTTGGTTT CACAGCTCGAGTAGCTGCAAAATCAAGTAGGTCAAATAGCAGAGACGAGAATGCATTTCAAGCATGTTAA
AA sequence Show only first row Show all	>Lus10035069 pacid=23162535 polypeptide=Lus10035069 locus=Lus10035069.g ID=Lus10035069.BGIv1.0 annot-version=v1.0 MGRKKRRIHVKLSRLYTFGCGRASFKEEEHSQIGGPGFSRIVFANEPDCFEAQIRDYGDNYVSTTKYNFATFLPKSLFEQFRRVANFYFLITGILSFTPL APYNAVSAIIPLIIVIAATMVKEGIEDWRRKQQDTEANNRVVKVHHKEGVFIQTEWKKLRVGDIVKMEKDEFFPADLILLSSSYEDGACYVETTNLDGET NLKLRQALETTLSVLNEDSDFKKFKSMIKCEDPNANLYTFVGSLEHGEEQYPLAPQQLLLRDSKLRNTEYIYGAVVFTGHDTKVMQNSTSPPSKRSRIEK KMDQIIYFLFGAVFFMALVGSIYFAISTKDDLKDGRMKRWYLRPDDSLVFFDPKRGVTAGVFHFLTVIMLYSYFIPISLYVSIEIVKVLQCIFINQDIHM YFEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKFSVADTSYGNGITEVERAMSRSTKRGNKDYTNNNNNNTIKGFNFQDKRIMNGQWVHE ANASTIQNFLRLLAVCNTAIPEVDEDHGTINYEAESPDEAAFVIAAREFGFEFYKRTQTSISVRELDMHSCKKFEREYTLLNILEFNSTRKRMSVIVKDE EGKILLLSKGADSVMFERLGKDGREFEGVTRTHVNQYADAGLRTLILAYRELCEDEYIDFTSKFNAAKSSVTTNRETLIEKVAEDLEKDLILLGATAVED KLQNGVPRCIDKLAQAGIRIWILTGDKIETAINIGLLRQGMKQIIINLELPELQSLEIAGEKIAINKVSKEHVQRQINEGKALVAASGGSSDAFALIIDG KSLTYALENDVKHLFLELSMSCASVICCRSSPKQKALVTRLVKNGTRKTTLAIGDGANDVGMLQEADIGVGINGVEGMQAVMSSDVAIAQFRYLERLLLV HGHWCYRRVSTMICYFFYKNVTFGISVFLYEAYASFSGQSAYNDWFLSLYNVFFTSFPVIALGVFDQDVSSRCALKFPLLYQEGVQNVLFSWWRIITWII NGVYTAIMIFFFCTKAMENQAFNKEGMTTGRDILGATMYTCIVWAVNLQMALSINYFTVIQHILIWGSIAFWYIFLLIYGSMSPGFAGNAYMIFVDALAP TPSYWIITLFAVISTLIPYFCFSTMQMRFFPMYHQIIQWIRHEGRSEDLEFCNTVRQRSIRPTTVGFTARVAAKSSRSNSRDENAFQAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25610			ATPase E1-E2 type family prote...		Lus10035069 [exp]	0	1
AT5G08110			nucleic acid binding;ATP-depen...		Lus10007978 [exp]	8.7	0.7424
					Lus10006631 [exp]	16.4	0.6925
AT1G77500			Protein of unknown function (D...		Lus10042723 [exp]	23.3	0.7345
AT1G55750			BSD domain (BTF2-like transcri...		Lus10020465 [exp]	34.0	0.6995
AT4G27640			ARM repeat superfamily protein...		Lus10034202 [exp]	37.1	0.7096
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10017147 [exp]	54.1	0.6649
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10017664 [exp]	58.2	0.6586
AT2G37050			Leucine-rich repeat protein ki...		Lus10015057 [exp]	66.4	0.6756
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10033768 [exp]	70.7	0.6735
AT1G21740			Protein of unknown function (D...		Lus10029683 [exp]	71.4	0.6552

Compare expression of checked genes

Lus10035069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.