Plant FIBer expression Database

Lus10035070 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G25597 40 / 0.0003 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017899
[exp]
216 / 1e-70 AT1G26140 78 / 1e-17 unknown protein
Lus10034406
[exp]
72 / 3e-15 AT1G26140 69 / 7e-15 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G111500
[exp]
43 / 5e-05 AT3G25597 49 / 3e-07 unknown protein
PFAM info
Representative CDS sequence
>Lus10035070 pacid=23162378 polypeptide=Lus10035070 locus=Lus10035070.g ID=Lus10035070.BGIv1.0 annot-version=v1.0
ATGGAGGATTGCAACCTCCTGGCTGCAGACTGTGTAGCACTATCCTGCTGCTGCCAATGCCTACTCCTACAGTTCCTCATCTTTGTCTTCCTCCAGATGC
CTCGGAGGCTGCTCCGCCGGACAAGAGACTACGTGAGGAGGAAACTCGCGAGGATGAGGAAGAGGAAGAAGGTAGAGACAGAGCTAAAGGAAAGCTCTAA
ACTTAGAGAAATGCTTGCTCAAATGTACCACGACGACGAATCCATGTGCATTGACATTGGTGGCACAGAGGATTTCAAGATTGTTGAAGATCATCATCAT
GATGAAGGAATGGGAGGTTGCACTGAGGAAATTGAGAGGGTGTTGGATGGATATTGTGCAAATGGGGAGTTTGGATTTGGGAGCTTTTGGAGGAAGGAGG
TTTCTAAAATGGGCTCACCACAGCCATCATTGTCATTGTCGTCATCGCCGAGGTCTTGGGGGAGGTCATCGGTGGCTTATTCATCATGTCCATCAGATAG
TTCATGTTCATCAATGAGAAGTATTAGTACTGTTGCAGCTAAGAAGAAGAAGAGGAGGAAAGAAGAGGGTTTAAAAGTTGTAGAGTTTGATTTGGTTGAA
ATCGTTCGTTCTTTATCTTCTTATGGGTCGTTTAAGAACATTGATAGGTTGTTAGATTGTAAGAGGTGCTCTCCTGCTGCTAGTTGGAGACGAAACATGA
TATTGACATGA
AA sequence
>Lus10035070 pacid=23162378 polypeptide=Lus10035070 locus=Lus10035070.g ID=Lus10035070.BGIv1.0 annot-version=v1.0
MEDCNLLAADCVALSCCCQCLLLQFLIFVFLQMPRRLLRRTRDYVRRKLARMRKRKKVETELKESSKLREMLAQMYHDDESMCIDIGGTEDFKIVEDHHH
DEGMGGCTEEIERVLDGYCANGEFGFGSFWRKEVSKMGSPQPSLSLSSSPRSWGRSSVAYSSCPSDSSCSSMRSISTVAAKKKKRRKEEGLKVVEFDLVE
IVRSLSSYGSFKNIDRLLDCKRCSPAASWRRNMILT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G26140 unknown protein Lus10035070
[exp]
0 1
AT5G05960 Bifunctional inhibitor/lipid-t... Lus10009872
[exp]
6.3 0.8917
AT1G35720 ATOXY5, ANNAT1 annexin 1 (.1) Lus10008227
[exp]
6.9 0.8483
AT4G01070 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYL... Lus10029452
[exp]
14.9 0.8694
AT4G16400 unknown protein Lus10004418
[exp]
16.1 0.8409
AT4G33550 Bifunctional inhibitor/lipid-t... Lus10019029
[exp]
16.2 0.8577
AT5G17820 Peroxidase superfamily protein... Lus10013631
[exp]
18.5 0.8683
AT2G44260 Plant protein of unknown funct... Lus10033542
[exp]
24.0 0.8464
AT1G08170 Histone superfamily protein (.... Lus10041351
[exp]
24.4 0.8475
AT2G39570 ACR9 ACT domain repeats 9, ACT doma... Lus10005157
[exp]
25.4 0.8010
AT4G17980 NAC ANAC071 NAC domain containing protein ... Lus10035373
[exp]
28.5 0.8522

Lus10035070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.