Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68690 496 / 6e-168 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G26150 486 / 4e-163 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT5G38560 472 / 8e-159 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G70460 417 / 6e-137 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 412 / 6e-135 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G10620 409 / 9e-134 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT3G24550 385 / 2e-125 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT2G18470 384 / 2e-125 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT1G70450 373 / 4e-124 Protein kinase superfamily protein (.1) AT4G34440 379 / 8e-123 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017898 [exp] 719 / 0 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10034082 [exp] 486 / 1e-163 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10003066 [exp] 484 / 9e-163 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10029151 [exp] 401 / 2e-134 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013014 [exp] 399 / 1e-133 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013013 [exp] 405 / 1e-131 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10011098 [exp] 401 / 1e-131 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 398 / 1e-129 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 389 / 4e-127 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G111600 [exp] 533 / 0 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.010G132900 [exp] 526 / 8e-179 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.017G110400 [exp] 490 / 2e-165 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 483 / 3e-162 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 419 / 3e-137 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.005G124400 [exp] 398 / 4e-131 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.018G081300 [exp] 399 / 2e-130 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.007G027000 [exp] 389 / 3e-127 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 372 / 3e-121 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.009G115200 [exp] 371 / 4e-120 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035071 pacid=23162558 polypeptide=Lus10035071 locus=Lus10035071.g ID=Lus10035071.BGIv1.0 annot-version=v1.0 ATGGCATCGATATCTCCAGCCCCTAACTCTTCAATTCCTGCTGCTGTTCCTCCACCATCCACACCATTGCCACCAACAACATCACCACCACCACAAGATA ATTCTACTCAGTCACCCCCACCCTTGCCGCCTTCTTCTTCACAACCACCTCTCCTTAGCCCTCCTCCGCCTGCAACACTTTCAACTCCACCACCCCAGCA ATCTACATCACCACCACCTAGTTCACCGAGCGGTCCTCCTCCTAGTCCTCCACCATCACTACCTTCTATTCCTCCACCTACATTGCCAACGCCAATGCCA CCACCACCGGTACCACCATCCGATCCACCTAATAATGCTCCTCCACCACCAGTACCGGTACCGCCATCTGATCCGCCTACTAATCCTTCTCCACCACTGC CGGTGCCACCATCTGATCCACCTACTAGTCCTTCTCCACCACCATCCACACCGCCGCCACCACAAACTTCAACTCCTCCCTCGCCACCTCCACCTTCACG ATCAACTCAACCTCCACCTCAAAGTTCACCGCCACCACCATCACAACCACCTACTAGTACACCTGCACCGCCTACAAATTCACCTCCTCCGCCAACAAGT GTACCTCTATCTCCACCACCTCCTCCAAGACCAATATCTTCCCCACCTCCGAGTAATACTTCCCTGCCTGCTCCAACTCCACCTAACTTGCAACCAACCA CCCCTTCAGGACCAAATTCCACTCAATCAACTCCACCACCGGCATTGTTTGATTCTGTGCACCGTTCAAGTTATACAAAGACACAGTCTACTACAGCTCC ACTGATGGCGAGTGGTTCCAGCAGTGACTTCATTAATTTTCCCCCAGAGCCTAATGGACTAGGCCACTCAAGGAATTTGTTTACGTATGAAGAAATGGTC ACAGCAACCAATGGATTTTCATCCCAGAATCTGTTGGGTGAAGGTGGGTTTGGGTGTGTGTATAAAGGCAACCTGCCAGATGGTACAGACGTAGCAGTAA AACAACTCAACATCTGTGGAAGCCAGGGTGAACGAGAATTTAAAGCTGAGGTCGATATCATTAGCCGAGTGCACCATCGACATTTGGTTTCACTTGTTGG TTATTGCATCTCGAATAGCCAAAGATTGCTTGTTTATGACTATGTCCCTAACAACACCCTTGATTTCCATCTTCACGGTGTGGGTGTACCTCTTTTGGAC TGGGCAAAACGTATCAAAATAGCTGCTGGCGCTGCTCGCGGATTAGCTTATCTACATGAAGACTGTCATCCTCGAATTATTCATAGGGATATTAAGTCGT CAAACATTCTGTTAGATAACAACTTTGAAGCCCAGGTTGCAGATTTTGGTCTTGCCAAACTTAATCCTGATGCCAACACACACATAACCACGCGTGTCAT GGGAACTTATGGATATGTCGCCCCGGAGTATGTAATAAGTGGCAAGTTAACTGAAAAATCCGATGTTTACTCCTTTGGAGTTGTGCTTTTGGAGTTAATC ACCGGGCAGAAGCCGGTGGATCCCTCCCAGTCTCCAGGAAAAGAGAGTCTTGTTGAACGGGCACGACCTTTCCTGAGTCATGCTCTAGTCAGCGGAGAAC TAGGTCGTCTAATAGATCCAAGGCTTGAGGGGAACTACGACGATGCTGAAATGTTCAGGATGATTGAGTCCGCTGCAGCCTGTGTCCGCCATGCTGCTGC AAAAAGACCCCGAATGGGCCAGATTGTCAGAGCTCTCAACGACATAGTTGCTGCAGATTTAACCAACGGAATGAAAATCGGAGAGAGCGAGGTAATCAGA TCAGCCGAAGAATCTGCACAGCTTAGATTAATGCAAAGAATGGCATTTGGTGATCAAGATTTTAGTACAGATTTCTTTACCCACAGTACCATGAATAGTC GAAATGATAGTCGAGTTTAA
AA sequence Show only first row Show all	>Lus10035071 pacid=23162558 polypeptide=Lus10035071 locus=Lus10035071.g ID=Lus10035071.BGIv1.0 annot-version=v1.0 MASISPAPNSSIPAAVPPPSTPLPPTTSPPPQDNSTQSPPPLPPSSSQPPLLSPPPPATLSTPPPQQSTSPPPSSPSGPPPSPPPSLPSIPPPTLPTPMP PPPVPPSDPPNNAPPPPVPVPPSDPPTNPSPPLPVPPSDPPTSPSPPPSTPPPPQTSTPPSPPPPSRSTQPPPQSSPPPPSQPPTSTPAPPTNSPPPPTS VPLSPPPPPRPISSPPPSNTSLPAPTPPNLQPTTPSGPNSTQSTPPPALFDSVHRSSYTKTQSTTAPLMASGSSSDFINFPPEPNGLGHSRNLFTYEEMV TATNGFSSQNLLGEGGFGCVYKGNLPDGTDVAVKQLNICGSQGEREFKAEVDIISRVHHRHLVSLVGYCISNSQRLLVYDYVPNNTLDFHLHGVGVPLLD WAKRIKIAAGAARGLAYLHEDCHPRIIHRDIKSSNILLDNNFEAQVADFGLAKLNPDANTHITTRVMGTYGYVAPEYVISGKLTEKSDVYSFGVVLLELI TGQKPVDPSQSPGKESLVERARPFLSHALVSGELGRLIDPRLEGNYDDAEMFRMIESAAACVRHAAAKRPRMGQIVRALNDIVAADLTNGMKIGESEVIR SAEESAQLRLMQRMAFGDQDFSTDFFTHSTMNSRNDSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10035071 [exp]	0	1
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10024074 [exp]	4.6	0.8819
AT1G29690		CAD1	constitutively activated cell ...		Lus10002768 [exp]	8.4	0.8352
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10014283 [exp]	9.6	0.8390
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10030261 [exp]	12.5	0.8581
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10041660 [exp]	13.6	0.8504
AT2G44260			Plant protein of unknown funct...		Lus10017582 [exp]	14.4	0.8169
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029334 [exp]	14.7	0.7790
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009798 [exp]	15.1	0.8321
AT3G49070			Protein of unknown function (D...		Lus10027501 [exp]	17.7	0.7536
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10004011 [exp]	20.5	0.7624

Compare expression of checked genes

Lus10035071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.