Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26160 308 / 2e-105 Metal-dependent phosphohydrolase (.1) AT2G23820 246 / 3e-81 Metal-dependent phosphohydrolase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017897 [exp] 471 / 1e-169 AT1G26160 329 / 2e-114 Metal-dependent phosphohydrolase (.1) Lus10015497 [exp] 262 / 1e-87 AT2G23820 331 / 2e-115 Metal-dependent phosphohydrolase (.1.2) Lus10019968 [exp] 260 / 1e-86 AT2G23820 332 / 1e-115 Metal-dependent phosphohydrolase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G111700 [exp] 333 / 1e-115 AT1G26160 352 / 9e-124 Metal-dependent phosphohydrolase (.1) Potri.006G178600 [exp] 257 / 9e-86 AT2G23820 305 / 2e-105 Metal-dependent phosphohydrolase (.1.2) Potri.010G133101 [exp] 72 / 3e-16 AT1G26160 82 / 8e-21 Metal-dependent phosphohydrolase (.1) Potri.010G133001 [exp] 65 / 2e-13 AT1G26160 84 / 2e-21 Metal-dependent phosphohydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [flax] [poplar] HD_PDEase PF01966 [flax] [poplar] HD HD domain
Representative CDS sequence Show only first row Show all	>Lus10035072 pacid=23162444 polypeptide=Lus10035072 locus=Lus10035072.g ID=Lus10035072.BGIv1.0 annot-version=v1.0 ATGGCCGTCAGTCCCTCTACCTTCTACTCTTCGCCCGCGCTCGACCGTTCCCTGCTTCATGGCGGCCGTTCGTCCTCCGTTTGCTTCATCCGTCCCTTTC TCCGTCCTGTTTTCTCGAATGATGCTCCCTTCCCGAGGTTCGCCGTCTCAGTTCGCTCTCAAAAGATTGATGAGCTGAGCGGGCGTGGACCTACGAAATC GCATTTTGAGGAGAACGGATCGTCATCGTCTGTTTCCTCGTCGATTGATTTTCTCACCTTCTGCCATCGCCTCAAGACTACCAAACGGAAGGGGTGGATC AATCATGGGATTAATGGCGCTGAATCTATCGCTGATCACATGTATCGCATGGCTCTGATGTCTCTGGTCGTCGGTGACCTTCCTGGTGTCAACAGAGAAA GATGTATGAAGATTGCGATTGTCCATGATATTGCAGAAGCTATTGTTGGAGATATAACACCATCTGATGGTGTGCCCAAGGCAGAAAAGAGCAGACTTGA GCAAGCGGCATTAGACGAAATGTGCAAAATGCTTGGCGGAGGCATGAGAGCTGAAGAGATCAAAGAACTATGGTACGAGTATGAAAACAATGCTTCCTTG GAGGCAAACCTTGTCAAGGATTTTGACAAAGTTGAGATGATTTTGCAAGCACTGGAATACGAAACTGGTAAGCTACCAAATCTTCCATCTAGAGGAACAT GTCCATTCAATGCTACTTTGGATGTATTGCTTAAACCATATGCACTCTATGGCTGTGCAGAACGTGGGAAGGTGTTGGATGAATTCTTCATCTCTACTGC AGGGAAATTCCAAACCGATATAGGAAAGAGTTGGGCAGCCGAGATCATATCGAGAAGGAAGTCATCACAACAGGCCGACAAGCTATAA
AA sequence Show only first row Show all	>Lus10035072 pacid=23162444 polypeptide=Lus10035072 locus=Lus10035072.g ID=Lus10035072.BGIv1.0 annot-version=v1.0 MAVSPSTFYSSPALDRSLLHGGRSSSVCFIRPFLRPVFSNDAPFPRFAVSVRSQKIDELSGRGPTKSHFEENGSSSSVSSSIDFLTFCHRLKTTKRKGWI NHGINGAESIADHMYRMALMSLVVGDLPGVNRERCMKIAIVHDIAEAIVGDITPSDGVPKAEKSRLEQAALDEMCKMLGGGMRAEEIKELWYEYENNASL EANLVKDFDKVEMILQALEYETGKLPNLPSRGTCPFNATLDVLLKPYALYGCAERGKVLDEFFISTAGKFQTDIGKSWAAEIISRRKSSQQADKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26160			Metal-dependent phosphohydrola...		Lus10035072 [exp]	0	1
AT3G03773			HSP20-like chaperones superfam...		Lus10010669 [exp]	2.2	0.8105
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10040409 [exp]	7.7	0.7734
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10026968 [exp]	19.2	0.7785
					Lus10001494 [exp]	26.5	0.7221
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	31.1	0.7608
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10002789 [exp]	33.0	0.7670
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10036638 [exp]	33.4	0.7542
AT3G11590			unknown protein		Lus10017001 [exp]	37.0	0.7371
AT4G18530			Protein of unknown function (D...		Lus10002991 [exp]	37.5	0.7310
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026815 [exp]	39.6	0.7333

Compare expression of checked genes

Lus10035072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.