Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71850 474 / 4e-162 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G24320 264 / 6e-82 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 224 / 3e-66 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G48040 213 / 4e-62 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G39120 188 / 2e-53 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 154 / 6e-41 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT3G63090 149 / 5e-39 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G33495 141 / 2e-36 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 140 / 2e-35 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 138 / 3e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017896 [exp] 1078 / 0 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 209 / 1e-60 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10011327 [exp] 200 / 1e-57 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012201 [exp] 197 / 2e-56 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005750 [exp] 191 / 1e-54 AT1G71850 263 / 9e-85 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000847 [exp] 190 / 2e-54 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10038710 [exp] 179 / 1e-49 AT2G39120 467 / 4e-164 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 159 / 2e-42 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000096 [exp] 157 / 5e-42 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115500 [exp] 556 / 0 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.004G223200 [exp] 266 / 4e-82 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 217 / 8e-64 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 214 / 1e-62 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.008G036600 [exp] 189 / 2e-53 AT2G39120 509 / 0.0 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 172 / 4e-47 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 146 / 6e-38 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.014G096800 [exp] 142 / 7e-36 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 138 / 2e-35 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.015G141700 [exp] 138 / 8e-35 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10035074 pacid=23162598 polypeptide=Lus10035074 locus=Lus10035074.g ID=Lus10035074.BGIv1.0 annot-version=v1.0 ATGATCTTCCTATTCCGCCGAATCTCCAACCCTCGCCGCCACCTTCACCACCGTACAATCGTCGATTTCGCCGCAATCAAGCACGTCCGTGACCGAGGGT TTGATCATGCCGTTGAGCGCGAGAACCATCTCAAGCCCTTGATTCACCTCAAGAACCTCATCAAATCGGAGCCGGCCAAGTCATTACCCCTTCCCGTCAT CTCCCAACACAGAGATTCCCTCCACATACCCATCCGTCCCATCGAGTTCATCCGGAAGTACCCTGCCGTTTTCGAGGAATTTCTCCCCGGCGGATTAGGG ATTCACCCTCACATCAAGCTCACTCAACAGGTAATCGATCTCGACGCTGAAGAGCAGTTGGTTTACCAGAGTCAAAGTTACAAGAAGCATGTCGCTGATA GGCTTGTTAAGTTGGTTATGCTCTCGCGAATTGATAAGATACCGTTGAACATTCTTGATAGCATTAGGTGGGATCTAGGTTTGCCAGATGATTATGCCAA AACAATAGTTCCCGAGTTTCCTGATTACTTCAGAATCGTTGGTAACAAAAAATCACTAGAACTGGTATGCTGGAATGATGAATTGGCTGTTTCATTGATG GAGAAGAGGGCTAAAAGTGGAGGTAAAGTTTATGAAAAGGGGATGCCTCTTTCGTTCCAGATGAAGTTTTCGGAAGGGTTTGAGATGGATAAGAAGGTGA ATAACTGGTTTCAAGAGTGGCAGAAGCTGCCTTATATCTCACCATATGAGAATGCTACACATTTGGGGTCGAATACCGATGATGCCGATAAATGGGCAGT CGCGGTTTTGCACGAGCTTCTGAATCTGTTTGTTTCGAAGAAGGCTGAGAGGGAGGTTCTATTGTCTGTGGGGGAGTGGTTGGGGATTCGATCTTGGTTC AAGAGAGCGTTGATTCAACATCCTGGGATTTTTTACGTCTCGGGAAAGATGGGAATGCATACTGTGGTTCTGAAAGAGGGATATAAAAGAGGATGGTTGG TTGAGAAGAATGAACTTGTTGATATCAGGAATCGATATATGCATCTTATGCACTTGGTGAATGAAGATCGTAAGGAAATTACTGCTCCTGCAGCAAGCAA TAAAAAACGGAAGAAGACAACTAAGCAGCCAGAATTGAAAGATAGTAATAAAGAGAATGATGCAGCAAATCCAAAGGAATCTGAGGTTGATGATGATAGT GATGATGAAGTTGCTTATGATGATGATGATGATGAGGATGAAGAGAGCGATGATTATGATGATGAAGATGATGAAATTGAGAGTAAGAAATCCAAACGTG GTAATACAAATGCTGAAATTGGCAAGAGAAGAGCAGGTAACTCGAGGACATTGGAAATGAGGGGTCCAAGAACAGAAAGGTCTGTCGATAGACCCTACAA GAAGGGGATGGATTTCAGTGCAGAAGATTCTCGAAGAATAGACACACGAAGGAGTTCGGACACGAGGGGGCCTTCAAGGGGTCCAAGAACAGAAAGGTCT GTCGATAGACCCTACAAGAAGAGGATGGATATCAGTGCAGAAAATTCCCGAAGACTAGATACACGAAGGAATTCGGAGATGAGGGGGCCTTCAAGGGATC CAAGAAGAGAAGCATCTGTTGATAGACCCTATAGGAAGAGTACGGAAAACAGTCCTGATCGTCACAGACGAACAGAAACACGAAGGAATTCGGAGATGAG GGGGCCTCCGAGGGGTCCAAGAAGAGAAGCATCTGTCGATAGACTCTATAGGAAGATTACTGAAGCACGACAGAATTCCGACTTGAGGGGGCCTTTAAGA GGTCCACCAAGGCAACGCTTAGACGATCAGCCTTACAGCAAGAACCGTGCAAGTGAAGCTCATGGTGGAGATTCCCAAATAACTGGCACACGCACACGTA GTAATTTCAGGGAAACCGCGGGGGAGAGGAGGACAGCTTCTCCTAGGAACTTGAAGAAATCTTCCGCTGATAAGAGAGTTGCTTAG
AA sequence Show only first row Show all	>Lus10035074 pacid=23162598 polypeptide=Lus10035074 locus=Lus10035074.g ID=Lus10035074.BGIv1.0 annot-version=v1.0 MIFLFRRISNPRRHLHHRTIVDFAAIKHVRDRGFDHAVERENHLKPLIHLKNLIKSEPAKSLPLPVISQHRDSLHIPIRPIEFIRKYPAVFEEFLPGGLG IHPHIKLTQQVIDLDAEEQLVYQSQSYKKHVADRLVKLVMLSRIDKIPLNILDSIRWDLGLPDDYAKTIVPEFPDYFRIVGNKKSLELVCWNDELAVSLM EKRAKSGGKVYEKGMPLSFQMKFSEGFEMDKKVNNWFQEWQKLPYISPYENATHLGSNTDDADKWAVAVLHELLNLFVSKKAEREVLLSVGEWLGIRSWF KRALIQHPGIFYVSGKMGMHTVVLKEGYKRGWLVEKNELVDIRNRYMHLMHLVNEDRKEITAPAASNKKRKKTTKQPELKDSNKENDAANPKESEVDDDS DDEVAYDDDDDEDEESDDYDDEDDEIESKKSKRGNTNAEIGKRRAGNSRTLEMRGPRTERSVDRPYKKGMDFSAEDSRRIDTRRSSDTRGPSRGPRTERS VDRPYKKRMDISAENSRRLDTRRNSEMRGPSRDPRREASVDRPYRKSTENSPDRHRRTETRRNSEMRGPPRGPRREASVDRLYRKITEARQNSDLRGPLR GPPRQRLDDQPYSKNRASEAHGGDSQITGTRTRSNFRETAGERRTASPRNLKKSSADKRVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10035074 [exp]	0	1
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	1.0	0.8787
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10022033 [exp]	1.7	0.8651
AT5G65630		GTE7	global transcription factor gr...		Lus10039630 [exp]	3.7	0.8780
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10028885 [exp]	5.1	0.8066
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	5.2	0.8246
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	7.5	0.8359
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	7.7	0.8598
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	8.1	0.8513
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10009548 [exp]	11.7	0.8274
AT3G51650			unknown protein		Lus10009097 [exp]	12.0	0.8080

Compare expression of checked genes

Lus10035074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.