Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20140 51 / 2e-08 SOUL heme-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019445 [exp] 69 / 2e-14 AT5G20140 422 / 3e-148 SOUL heme-binding family protein (.1.2) Lus10011992 [exp] 53 / 5e-10 ND 40 / 7e-05 Lus10001847 [exp] 46 / 2e-06 AT5G20140 330 / 3e-111 SOUL heme-binding family protein (.1.2) Lus10038112 [exp] 0 / 1 AT1G06450 52 / 4e-08 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 0 / 1 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000561 [exp] 0 / 1 AT1G61470 143 / 1e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035077 [exp] 0 / 1 AT1G61470 162 / 6e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10001651 [exp] 0 / 1 AT1G61470 167 / 4e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10013345 [exp] 0 / 1 AT5G20140 464 / 8e-164 SOUL heme-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073501 [exp] 50 / 7e-08 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035075 pacid=23162543 polypeptide=Lus10035075 locus=Lus10035075.g ID=Lus10035075.BGIv1.0 annot-version=v1.0 ATGGACGATGGTGTCATTCATGGTTCATCCATGGAGGCCAGAGTTTGTGTTCATAGGGACTTCTGTAATGGGGTCAATCCAAGTAACGAGAAGTTTTGCT GCCATGTGGATTATTGGGATTCAGTATCAAATAATCATTTCTTTTCTCCTGGAGGTTTGTGGGACATAATTCAACAGATGAAAGAAGGAACTAATACTGT TGGAGCTAATGAGCAATCAACGCAACGACGACCATCATCACATTTGGAGGCAAGGCTACTCTTTGCTGCTGATATGGAATGGGATACAGCACCTTGCTCT GATAAAGATGAGGATAAGGATGATGATGATACACAGGAGGACCTGCTGGTCGAGCAGTTGGTAGAAAGAGGGGCTCTTTGCGCTTCCTGGAGATTTTGA
AA sequence Show only first row Show all	>Lus10035075 pacid=23162543 polypeptide=Lus10035075 locus=Lus10035075.g ID=Lus10035075.BGIv1.0 annot-version=v1.0 MDDGVIHGSSMEARVCVHRDFCNGVNPSNEKFCCHVDYWDSVSNNHFFSPGGLWDIIQQMKEGTNTVGANEQSTQRRPSSHLEARLLFAADMEWDTAPCS DKDEDKDDDDTQEDLLVEQLVERGALCASWRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20140			SOUL heme-binding family prote...		Lus10035075 [exp]	0	1
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10008180 [exp]	1.4	0.7783
					Lus10011620 [exp]	7.7	0.6074
AT2G01260			Protein of unknown function (D...		Lus10041982 [exp]	13.1	0.6016
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10029937 [exp]	14.0	0.6054
					Lus10005511 [exp]	14.7	0.5968
AT1G67000			Protein kinase superfamily pro...		Lus10026761 [exp]	18.1	0.6323
					Lus10007169 [exp]	49.1	0.5585
AT1G63820			CCT motif family protein (.1)		Lus10032288 [exp]	54.6	0.5150
AT1G23770			F-box family protein (.1)		Lus10011411 [exp]	57.1	0.5973
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040323 [exp]	65.1	0.5637

Compare expression of checked genes

Lus10035075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.