Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61470 162 / 1e-47 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44240 154 / 3e-45 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 155 / 6e-45 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G06450 156 / 8e-45 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 153 / 2e-44 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT2G32070 151 / 8e-44 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27890 151 / 2e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G10960 149 / 7e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 147 / 3e-42 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT5G22250 139 / 6e-39 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017905 [exp] 585 / 0 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10001651 [exp] 559 / 0 AT1G61470 167 / 4e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 529 / 0 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000561 [exp] 509 / 0 AT1G61470 143 / 1e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035078 [exp] 408 / 9e-144 AT1G06450 168 / 2e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000327 [exp] 396 / 8e-139 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10038113 [exp] 342 / 5e-119 AT3G44240 140 / 3e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017895 [exp] 269 / 7e-91 AT1G06450 98 / 4e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017894 [exp] 248 / 4e-83 AT1G06450 47 / 8e-07 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038700 [exp] 202 / 6e-63 AT1G61470 182 / 8e-56 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 157 / 6e-46 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.001G046700 [exp] 157 / 7e-46 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 152 / 8e-44 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 148 / 2e-42 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G262500 [exp] 146 / 1e-41 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 143 / 3e-40 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 140 / 2e-39 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 137 / 4e-38 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 134 / 3e-37 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10035077 pacid=23162369 polypeptide=Lus10035077 locus=Lus10035077.g ID=Lus10035077.BGIv1.0 annot-version=v1.0 ATGGCTGTGAGGGAAGTCTGGAACCATAATTTCGATCAAGAGCTCCACGCCATGGAAGTCTGTTTGAGAAGCTACACAGTAGTGTCCGTCGACACAGAAT TCCCAGGTTGCCTCCGTCCGACACCGAGGTACGCTTCCGAGGAACTCCGATTTCAGAACTTGAAGTACAACGTCGGCGCTACCTCTCTGATTCAATTAGG GCTCACTCTCTGTAATTCCGAGGGCACCGTCGGCGGAATCTGGCAATTCAATTTCCAATTCGACCTAGACCACGACCTACACTCCAAAGATTCCACCGAT TTCTTGGCCCTCCACGGAATCGATTTCCTGAAATTGAAAACCCACGGTGTTGACCGGGTCAGATTCGGCGCCATGTTCGGAGCGGTGATTCGGAGAAGGC GGAGTGCGATTACGTGGATCACTTTCCACGGAGTTTACGATTACGCCTATCTCGTGAAGGCGGTGAGTTTCCGTCCAGTTGCGGAATCATCGGCGGAATT CGTTAATTTTTTGGGGATCGGGTTTGATTCGGTGGTGGATTGCAAGTATATGGCTAAGTTGTATGAGGAGACCGGTAGTGAAATTGGGTTGCAGAAGTTA GCGGATGCTTTGGGGGTGAAGAGAAGAGGGGAAGCTCATACTGCCGCCTCTGATAGTTTCTTGACGGCGCTCGTTTACTTTGAGTTGAAGAAGAAACTGA TGCTGTTGGGTGTTGATGAAGAGTCTTACGTTGACTACGTCTATGGAATCAGCACCAAAATCTCCAGGAAGCAGAAAGAGCCCCTCTTTCTACCAACTGC TCGGCCAGCAGGTCCTCCTGTGTATCATCATCATCCTTATCCTCATCTTTATCAGAGCAATTTGCTGTATCCCATTCCATATCAGCAGCAAAGAGTAGCC TTGCCTCCAAATGTGATGATGGGTCGTCGTTGGGTTGATTGCTCATTAGCTCCAACAGTATTAGTTCCTTCTTTCATCTACTGA
AA sequence Show only first row Show all	>Lus10035077 pacid=23162369 polypeptide=Lus10035077 locus=Lus10035077.g ID=Lus10035077.BGIv1.0 annot-version=v1.0 MAVREVWNHNFDQELHAMEVCLRSYTVVSVDTEFPGCLRPTPRYASEELRFQNLKYNVGATSLIQLGLTLCNSEGTVGGIWQFNFQFDLDHDLHSKDSTD FLALHGIDFLKLKTHGVDRVRFGAMFGAVIRRRRSAITWITFHGVYDYAYLVKAVSFRPVAESSAEFVNFLGIGFDSVVDCKYMAKLYEETGSEIGLQKL ADALGVKRRGEAHTAASDSFLTALVYFELKKKLMLLGVDEESYVDYVYGISTKISRKQKEPLFLPTARPAGPPVYHHHPYPHLYQSNLLYPIPYQQQRVA LPPNVMMGRRWVDCSLAPTVLVPSFIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61470			Polynucleotidyl transferase, r...		Lus10035077 [exp]	0	1
AT1G61470			Polynucleotidyl transferase, r...		Lus10000561 [exp]	6.4	0.6877
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10027113 [exp]	6.7	0.7564
AT3G18430			Calcium-binding EF-hand family...		Lus10022173 [exp]	7.9	0.7655
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10020435 [exp]	14.0	0.7539
AT2G46220			Uncharacterized conserved prot...		Lus10012651 [exp]	15.1	0.7570
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10030764 [exp]	15.9	0.7262
AT4G01400			unknown protein		Lus10012607 [exp]	24.4	0.7278
AT1G16250			Galactose oxidase/kelch repeat...		Lus10013899 [exp]	29.3	0.7361
AT2G46220			Uncharacterized conserved prot...		Lus10010135 [exp]	29.6	0.7509
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10028990 [exp]	32.1	0.7552

Compare expression of checked genes

Lus10035077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.