Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06450 168 / 2e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 159 / 8e-47 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 154 / 2e-44 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44240 151 / 3e-44 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 152 / 4e-44 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT2G32070 151 / 6e-44 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G10960 149 / 3e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 149 / 5e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT1G27890 146 / 8e-42 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G22250 140 / 1e-39 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000327 [exp] 549 / 0 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017905 [exp] 428 / 2e-151 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10001651 [exp] 429 / 8e-151 AT1G61470 167 / 4e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 423 / 1e-149 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035077 [exp] 408 / 8e-144 AT1G61470 162 / 6e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000561 [exp] 400 / 5e-141 AT1G61470 143 / 1e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10038113 [exp] 321 / 1e-110 AT3G44240 140 / 3e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10007771 [exp] 234 / 9e-76 AT1G61470 170 / 5e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029713 [exp] 229 / 9e-74 AT5G10960 144 / 4e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038700 [exp] 211 / 1e-66 AT1G61470 182 / 8e-56 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G046700 [exp] 152 / 2e-44 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 152 / 3e-44 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.006G205600 [exp] 147 / 4e-42 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 145 / 2e-41 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 143 / 2e-40 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G262500 [exp] 142 / 2e-40 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 140 / 1e-39 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 139 / 3e-39 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 136 / 4e-38 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10035078 pacid=23162510 polypeptide=Lus10035078 locus=Lus10035078.g ID=Lus10035078.BGIv1.0 annot-version=v1.0 ATGGGTTTTCTCGTGAGGGAAGTCTGGGACGAAAATCTCCGTCAAGAATTGAAAGCCATGGAAGAATGTCTGGCCAAGTACTCAGTCGTATCGGTGGACT CCGAATTCCCAGGCTTCCTCTGTCCGACGCCCAGGTACGCTTCCGAGGAGCTTCGATTTGAGAACTTGAAGTACAACGTCGGCCAAACCTCTCTCATCCA ATTAGGTCTGACTCTCTCCAACACAAAAGGCACCGTCGGCGGTATCTGGCAGTTCAATTTCCAATTCGACCAAGACAGCGATCTCCACTGCCCAAATTCA ATCGAATTCTTAATCCTCCACGGGATCGATTTCAACAGGCTCAAAACCCACGGGATTGACCGGGTTAAATTCGGCACGGCGTTCGGAAGGCTGATTGCGA GAAGGAAAAGTTCGATTACGTGGATCACTTTCCACGGAGTATACGACCTCGCCCATATTGTGAAAGCGGTGAGTTTCCGTCCGGTTGCGGAATCGTCGGC GGAATTCGTTGGCGTTTTGGGGAGGGGGTTTGATTCAGTGGTGGATGTGAAATACATGGCTAAGTTTTATGAAGAGACGGGGAGTGAAATTGGATTGCAG AAGTTAGCTGATAATTTAGGGGTGAAGAGAAGAGGGGAAGCTCATACGGCTGCTTCCGACAGTTTGTTGACGGCGCTGGTTTACTTCAAGCTGAAGAAGA AGCTGAAGCAGCAGGGGATTGAGGAAAACGTTTACTTTGACTTCGTGTATGGAATCAGTTCCAGAATCTCTAGGGAGTTCATCAATGCTGCTGCTGCGAT TGCGTATCAGGGGGGTATGGCGTATGCGAATCCGTATTATGAGAGGAATTTGGCTGCGGAATTGATGATGATGGGTCATTGGGATTATTGCTCTGCTACT GCTGCAACACCAGTGTCATCTCTGATCTATGGATGA
AA sequence Show only first row Show all	>Lus10035078 pacid=23162510 polypeptide=Lus10035078 locus=Lus10035078.g ID=Lus10035078.BGIv1.0 annot-version=v1.0 MGFLVREVWDENLRQELKAMEECLAKYSVVSVDSEFPGFLCPTPRYASEELRFENLKYNVGQTSLIQLGLTLSNTKGTVGGIWQFNFQFDQDSDLHCPNS IEFLILHGIDFNRLKTHGIDRVKFGTAFGRLIARRKSSITWITFHGVYDLAHIVKAVSFRPVAESSAEFVGVLGRGFDSVVDVKYMAKFYEETGSEIGLQ KLADNLGVKRRGEAHTAASDSLLTALVYFKLKKKLKQQGIEENVYFDFVYGISSRISREFINAAAAIAYQGGMAYANPYYERNLAAELMMMGHWDYCSAT AATPVSSLIYG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	0	1
AT1G06450			Polynucleotidyl transferase, r...		Lus10000327 [exp]	1.0	0.9803
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	1.4	0.9715
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	2.4	0.9711
AT4G29780			unknown protein		Lus10011946 [exp]	2.8	0.9684
AT4G34320			Protein of unknown function (D...		Lus10011295 [exp]	3.2	0.9677
AT1G64700			unknown protein		Lus10008274 [exp]	3.5	0.9674
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10032372 [exp]	4.9	0.9652
AT5G38700			unknown protein		Lus10001456 [exp]	5.2	0.9549
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	5.3	0.9659
AT4G00300			fringe-related protein (.1.2)		Lus10005120 [exp]	6.5	0.9463

Compare expression of checked genes

Lus10035078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.