Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26170 1137 / 0 ARM repeat superfamily protein (.1) AT1G24822 43 / 0.0005 unknown protein AT1G25097 43 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000328 [exp] 907 / 0 AT1G26170 645 / 0.0 ARM repeat superfamily protein (.1) Lus10031911 [exp] 378 / 2e-124 AT1G26170 283 / 1e-89 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T108626 [exp] 1214 / 0 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1) Potri.008G109300 [exp] 1212 / 0 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Lus10035079 pacid=23162449 polypeptide=Lus10035079 locus=Lus10035079.g ID=Lus10035079.BGIv1.0 annot-version=v1.0 ATGGCTACTCAGCTGTCTCACTGCCACTCGACCCGAGCCCGGAGGTCCGTAACTTCGCCGAGACTTCTCTCAATCAGGCCTCTCTTCAGCCAGCAATTCA TACGGAAGCACTGGGAAGAAGATGACGATGTTACAGTATCCGTGGAAGAAAAGGAAGTTATACGTAAGCATCTTCTAGCCTCTGTGGATGACTCTCATCG GAAAATATGCACAGCAATTAGCATGGCTATAGCATCCGTAGCTGCTTATGACTGGCCGGAGAATTGGCCTGAACTATTACCATCACTTCTTAGGCTTATC AACGACAAGAGTCATATGAATGGAGTGCAGGGAGCTCTAAGGTGCTTGGCTCTTCTTTCTGGAGATTTGGATGACACAGTGGTGCCAACATTAATACCCG TGTTATTTCCAAGCTTGCATATCATTGTATCATCTTCTCAGAATTTTAACAAATACCTGCGTTCAAAAGCACTCTCTGTGGTTTATTCATGCGTCTCTAT CATCGGGGTTATCAGGGGTGTATATAAGACGGAAACTACTACATTGATGGCACCAATGGTTAAACCATGGATGGATCAGTTTGCTATCATCTTAGGACAA CCCGTTCAATCCCAGGATCCTGATGATTGGAGCATTAGGATGGAGGTCTTGAAGTGCTTGAGTCAGTTTGTTCAAAATTTCCCAACCCTAGCCGAAGGAG AATTTATGGTTGTTGTGGAACCTCTGTGGCAAACATTTGTCACTTCTCTGGGTGTATACTTACGGTCATCAATACATGGTGCTGAAGATTCATTTGAAGG CAATTATGACTCTGATGGTGCAGAGAAGGGCCTCGATTCCTTTGTCATTCAGCTTTTTGAGTTTCTCTTAACCATTGTTGGCAGTGCAAGGCTGAGAAAG GTTGTCTTGAGTAATATTAATCAGCTGGTATATCACACAGTAGCATTTCTGCAAATAACTGAACAACAGGCAAGGATCCATACGTGGTCAACTGATGCTA ATCAATTTGTGGCAGACGAGGATGACGTTACTTATAGCTGTCGTGTTTCTGGTGCACTTTTGCTAGAAGAGGTGATGACTTCGTGTGGTTTAGAGGGGAT CAATGCGGTCATAGATGCTTCAAGACAAAGTTTGTCATACATGCTCTACAATCCTGCATGTTTTCCCTGTCTCTCCAGTCCAATAAGGGAGGCAGCACTC TTTGCGCTGGCATCAGTTTCAGATCAATTGCTCGAAGCTGAGAGTTCAGGGACTACCAATATTGGCGTAGGAAACCTTATAGAATCAATTGCTGCTGAAG ACATCCGAATTGGGCCGCATGAGTATCCCTTTCTTTGTGCGCGTGTTTTTATGCTGGTCGCTAAGTTCTCCTCTGTGATTAGTCACGTGGTCCTCGAGCA ATTCCTTTATGCTGCAATGAAAACTGTTGGCATGGATGTTCCCCCGCCGGTGAAGGTAGGTGCTTGCCAAGCTCTTTCTCAGCTCCTCCCTGAAGCTAAT AAAGGGATTGTCCAATCTCAACTGATAGGTTTATTGTCATCTCTTGCAGATCTACTTCAACAGGCATCTGATGAAACTTTACACCTAGTCCTGGAAACAC TGCAAGCTGCTATTAAGGCAGGTTATGAAATATCGGTAGCAATTGAGTCTACGATCTCACCGGTGATTTTGAATGTGTGGGCATCACATATTTCGGACCC TTTTATTGGTATTGATGCAATTGAAGTCTTGGAGGCCATAAAAAATGCCCCTGGCTGTATTCATCCATTGGTTTCTCGAGTTCAGCCTCATATCGGTCCA ATTTTGAACAAGCCACGTGAACAGCCTGAAGGATTGGTAGCTGGATCACTTGATCTGAATGCTCCGATGGACGTTGTGAGAGTACTATATGATGGTTGTT TTGATGCTATCACTAGGATTGTCCTTCAGAGTGATGACCATAGTGAATTGCAGAATGCAACTCAATGTTTGGCTGCTTTTATTTCTGGGGGGAGACAAGA AGTTCTTGCTTGGGCTGTTGATTCTGGGTTTGCAATGAGAAGTTTGCTTGATGTAACATCAAGGCTTCTTGATCCAAGTCTTGAAAGCTCTGGCTCTCTT TTTGTTGGGAATTACACTTTGCAACTGATTTTGCATCTTCCACAGCAGATGGCACAACATACCCCAGACCTTATTGCTGCTCTTGTTAGAAGAATGCAGT CTGCTCAAATAGCTGGATTGCGAAGCTCCTTGATAGTCCTTTTCGCTCGATTGGTCCACATCAGTGCCCCTAATGTGGAACAGTTCATCAATATGCTAGT TAGTATCCCAGCCGAGGGCCATGATAATGCCTTTGTTTATGTCATGTCAGAATGGACAAAACAACAAGGGGAGATTCAAGGAGCCTATCAGATTAAGGTG ACAACCACTGCTTTGACCTTATTGCTTTCCACCAGGCATTCTCAACTTGGAAATGTCAATGTACAAGGGAACCTAATAAAGACTACGGAAGGTATAACTA CACGCTCAAAGGCTAAAGTTACTCCTGAGAAGTGGACGATGGTGCCACTGCCTTTTAAGATAGTGTCTTTACTAGCTGACACACTGATTGAAATGCGGGA ACAAGTGCAGATAGTGTCTTTACTTGATGATGAAGAGGAGATTGAATGGGAAGAAATTGATGAAGACGACGGCGATGCTGACAAAAACTTGCTGTATTCA GGCGCTGCTGTATCATCCGGAAGGGCCACTTATGACGAACTTGAAGCCATGGCAAAAGCATTTGACGGGGATCAAGAGGATGAAGACGACAATGAGCTAT TGAGTGCCGGGGATCCATTAAACCAGATTAATGTGGCATCTTATCTTGGTGACTTCTTTACAAAGTTGTGGAATGGAGACAGACCTCTGTTTGAGCATTT GTGCCAGGTTTGCACCATTTCATCTAAAATCAATTTGCTGGAATCTTACTTCCAAGCTCTCCCCCGCTACTTTTTCCATTGCTCAATCTCTTTCTGGACT GGTGAAAATGCAGAATTTGCGACGAGATCAAGTGGAGGCTCTTCAGACAGTAGTGGCAGTACACCACTGATTCCTCGTAGCAGTTGCAGTTTCCAGGGAG CTCTATGGTCGTCATAG
AA sequence Show only first row Show all	>Lus10035079 pacid=23162449 polypeptide=Lus10035079 locus=Lus10035079.g ID=Lus10035079.BGIv1.0 annot-version=v1.0 MATQLSHCHSTRARRSVTSPRLLSIRPLFSQQFIRKHWEEDDDVTVSVEEKEVIRKHLLASVDDSHRKICTAISMAIASVAAYDWPENWPELLPSLLRLI NDKSHMNGVQGALRCLALLSGDLDDTVVPTLIPVLFPSLHIIVSSSQNFNKYLRSKALSVVYSCVSIIGVIRGVYKTETTTLMAPMVKPWMDQFAIILGQ PVQSQDPDDWSIRMEVLKCLSQFVQNFPTLAEGEFMVVVEPLWQTFVTSLGVYLRSSIHGAEDSFEGNYDSDGAEKGLDSFVIQLFEFLLTIVGSARLRK VVLSNINQLVYHTVAFLQITEQQARIHTWSTDANQFVADEDDVTYSCRVSGALLLEEVMTSCGLEGINAVIDASRQSLSYMLYNPACFPCLSSPIREAAL FALASVSDQLLEAESSGTTNIGVGNLIESIAAEDIRIGPHEYPFLCARVFMLVAKFSSVISHVVLEQFLYAAMKTVGMDVPPPVKVGACQALSQLLPEAN KGIVQSQLIGLLSSLADLLQQASDETLHLVLETLQAAIKAGYEISVAIESTISPVILNVWASHISDPFIGIDAIEVLEAIKNAPGCIHPLVSRVQPHIGP ILNKPREQPEGLVAGSLDLNAPMDVVRVLYDGCFDAITRIVLQSDDHSELQNATQCLAAFISGGRQEVLAWAVDSGFAMRSLLDVTSRLLDPSLESSGSL FVGNYTLQLILHLPQQMAQHTPDLIAALVRRMQSAQIAGLRSSLIVLFARLVHISAPNVEQFINMLVSIPAEGHDNAFVYVMSEWTKQQGEIQGAYQIKV TTTALTLLLSTRHSQLGNVNVQGNLIKTTEGITTRSKAKVTPEKWTMVPLPFKIVSLLADTLIEMREQVQIVSLLDDEEEIEWEEIDEDDGDADKNLLYS GAAVSSGRATYDELEAMAKAFDGDQEDEDDNELLSAGDPLNQINVASYLGDFFTKLWNGDRPLFEHLCQVCTISSKINLLESYFQALPRYFFHCSISFWT GENAEFATRSSGGSSDSSGSTPLIPRSSCSFQGALWSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26170			ARM repeat superfamily protein...		Lus10035079 [exp]	0	1
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10009572 [exp]	2.2	0.9103
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	2.8	0.9235
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	3.7	0.9218
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003576 [exp]	6.7	0.8719
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	8.7	0.9169
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	10.6	0.9159
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10034355 [exp]	13.0	0.8743
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10015971 [exp]	14.7	0.8855
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10011867 [exp]	14.9	0.8161
AT5G17250			Alkaline-phosphatase-like fami...		Lus10005793 [exp]	15.9	0.8613

Compare expression of checked genes

Lus10035079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.