Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13520 300 / 9e-99 Protein of unknown function (DUF1262) (.1) AT1G13480 288 / 5e-94 Protein of unknown function (DUF1262) (.1) AT1G13530 281 / 1e-91 Protein of unknown function (DUF1262) (.1) AT1G13470 275 / 3e-89 Protein of unknown function (DUF1262) (.1) AT1G13540 274 / 7e-89 Protein of unknown function (DUF1262) (.1) AT1G13510 270 / 3e-87 Protein of unknown function (DUF1262) (.1) AT1G13500 261 / 6e-84 Protein of unknown function (DUF1262) (.1) AT1G13550 257 / 4e-82 Protein of unknown function (DUF1262) (.1) AT1G13490 254 / 3e-81 Protein of unknown function (DUF1262) (.1) AT1G61600 225 / 3e-69 Protein of unknown function (DUF1262) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031913 [exp] 709 / 0 AT1G13480 305 / 8e-101 Protein of unknown function (DUF1262) (.1) Lus10031916 [exp] 280 / 5e-93 AT1G61600 178 / 9e-54 Protein of unknown function (DUF1262) (.1) Lus10030977 [exp] 259 / 8e-83 AT1G61600 342 / 9e-115 Protein of unknown function (DUF1262) (.1) Lus10031914 [exp] 176 / 1e-53 AT1G13550 114 / 2e-30 Protein of unknown function (DUF1262) (.1) Lus10031915 [exp] 129 / 1e-35 AT1G13510 108 / 8e-29 Protein of unknown function (DUF1262) (.1) Lus10035372 [exp] 53 / 3e-08 AT1G61600 84 / 2e-19 Protein of unknown function (DUF1262) (.1) Lus10035379 [exp] 42 / 0.0001 AT1G61600 83 / 3e-19 Protein of unknown function (DUF1262) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109500 [exp] 382 / 8e-131 AT1G13480 339 / 3e-114 Protein of unknown function (DUF1262) (.1) Potri.T077590 [exp] 376 / 2e-128 AT1G13480 334 / 1e-112 Protein of unknown function (DUF1262) (.1) Potri.T093108 [exp] 352 / 3e-119 AT1G13480 323 / 3e-108 Protein of unknown function (DUF1262) (.1) Potri.008G109400 [exp] 351 / 7e-119 AT1G13480 321 / 2e-107 Protein of unknown function (DUF1262) (.1) Potri.018G008300 [exp] 348 / 1e-117 AT1G13480 330 / 1e-110 Protein of unknown function (DUF1262) (.1) Potri.010G133500 [exp] 292 / 1e-95 AT1G13480 310 / 3e-103 Protein of unknown function (DUF1262) (.1) Potri.004G106100 [exp] 265 / 3e-85 AT1G61600 398 / 5e-137 Protein of unknown function (DUF1262) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06880 [flax] [poplar] DUF1262 Protein of unknown function (DUF1262)
Representative CDS sequence Show only first row Show all	>Lus10035080 pacid=23162434 polypeptide=Lus10035080 locus=Lus10035080.g ID=Lus10035080.BGIv1.0 annot-version=v1.0 ATGTATGTGACTCGTCCTCTTTCTTTGTACAGAAGGGATCCTTCTGCAGCGTCTTTGCCTCCTCCGGAAGGACCCAACTCAGGGATACTAGTTATCCAAG ACGAAGAATCTCAGCCAACTTGCTTCTTCGGGTTGTGCAACGACAGCCAAGTCAGAGACCTTCCTTTCCCTCAGAACAAGAACCTCCAAGTTCGATACAC CAAGCATTCCGGCGAGAATCATCATGTCGAAATCAATCGAGTCGTCTTCATCCCTGTTCTTAATCAGCCACTCTCCACCAATCGTTACTATGTCATCAAG CGCCATGGAAACCAGAAAGGGGAAGCTTACAGAAGTTCTACAGAGGAGGACATGACAACATGCTGCTTTTGCAATTGCATTCCGGATTTGAAGCCAGAAC CATTTAAGCCACAGGGACAGGATATGTACGAGCAATTTGAGGTCTTCCCACATAAATCCTGGTGTGGAAGGAACGGCTACTTCGCCAGATCCGTAGCAAC AGATGGGTTCCCTCCTCATTTCCTAAGAAGAAACGGCTGGAAGCTCCACACCTCATCTCCTCGAGAATTCGAGCTACTCGATGAAGCCTCAGGTGTAGAC TGGAAGCTTCGAGCTCGCCTTCCTGATGATGATGATCACAATATTTCGGTGGTGGGGAAGTGGTATTGTCCTTTCTTGTTCATCAAGGAATCGGGAAGGG GAGTCCAAGAACAAGTTATCCACTCGCGATTCTACAAAATGACATTGGAGCAACAGTGGGAGCCGATTTTTAGTTGCGGTAATAAGATTGTTGAAGGAAG TAGTGATGGTCATGACTATGTAACTGTGGATGTTGATGTCGAGACCGAAGGTGTGAAGGTTGGTGGGAGGGATGTTATGGGACATAAGGTTGGGGACGTT GATGGTGATGGGGTGGTTTGGTTTAGGAGGAGTAGTGTGGATGGGAAGACGAAGGGTGGCGATGATGGTGAAGTGATCATCTGTGTTGGATTGAGCAAGG TGATTGTGGAGAGGATTCAATGGGAGGAAGAAAGAGTTGGATGGAGAAGAAGTTGTGAGGATGGGAAGAATGGGGGGATGGTGAGGGTGATCAAGAAAGT TGATTTTGAAGGAGTTAGAGGGATGAAGACATGGAAGAGATTTGAGTATTTTGTGTTGGTTGAGAGGTTTGTGTTGAGGAGGATGGATGAGAGTTTTGTT ATGAGTTATGAGTTCAAGCATCTTCATCAGTTTAGGACCAAATGGGAGTAG
AA sequence Show only first row Show all	>Lus10035080 pacid=23162434 polypeptide=Lus10035080 locus=Lus10035080.g ID=Lus10035080.BGIv1.0 annot-version=v1.0 MYVTRPLSLYRRDPSAASLPPPEGPNSGILVIQDEESQPTCFFGLCNDSQVRDLPFPQNKNLQVRYTKHSGENHHVEINRVVFIPVLNQPLSTNRYYVIK RHGNQKGEAYRSSTEEDMTTCCFCNCIPDLKPEPFKPQGQDMYEQFEVFPHKSWCGRNGYFARSVATDGFPPHFLRRNGWKLHTSSPREFELLDEASGVD WKLRARLPDDDDHNISVVGKWYCPFLFIKESGRGVQEQVIHSRFYKMTLEQQWEPIFSCGNKIVEGSSDGHDYVTVDVDVETEGVKVGGRDVMGHKVGDV DGDGVVWFRRSSVDGKTKGGDDGEVIICVGLSKVIVERIQWEEERVGWRRSCEDGKNGGMVRVIKKVDFEGVRGMKTWKRFEYFVLVERFVLRRMDESFV MSYEFKHLHQFRTKWE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13520			Protein of unknown function (D...		Lus10035080 [exp]	0	1
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	2.2	0.9696
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	2.4	0.9615
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	2.4	0.9677
AT2G46600			Calcium-binding EF-hand family...		Lus10005985 [exp]	3.0	0.9650
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Lus10042040 [exp]	3.0	0.9578
AT1G30190			unknown protein		Lus10023301 [exp]	3.7	0.9523
AT2G46600			Calcium-binding EF-hand family...		Lus10030227 [exp]	4.6	0.9589
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	5.7	0.9588
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	6.7	0.9616
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	9.2	0.9504

Compare expression of checked genes

Lus10035080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.