Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26180 317 / 2e-108 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031917 [exp] 556 / 0 AT1G26180 282 / 7e-94 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109700 [exp] 350 / 4e-121 AT1G26180 340 / 2e-117 unknown protein Potri.T046554 [exp] 349 / 8e-121 AT1G26180 339 / 3e-117 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09991 [flax] [poplar] DUF2232 Predicted membrane protein (DUF2232)
Representative CDS sequence Show only first row Show all	>Lus10035081 pacid=23162486 polypeptide=Lus10035081 locus=Lus10035081.g ID=Lus10035081.BGIv1.0 annot-version=v1.0 ATGACTATTATCATCTGGCATAGCAATAAAGAACCACTTCCCCAGCTATCTTCTCTGGAAGAGATGAACTTCACCAGAATCCAAAATCATAGCTGCTACC GTCCGTTAATTTCCCAAATTTACCAACTCCCCAGTGCTCATCACTTCCCCGAAACATTCCGATTCCCCACCCCACAAAGATTCACTTCTCCGACGCATTT GCCGCTCTTCAAGTTGTTGCCGAGCATCTCCAGAATCAATGCATCCGTCGTGGACGGCCTCCGACAAGAAGATGGAGGAGATGAAGGGCTTGCCGATGAG GTGGACTACTTGGCGCCAGATGGTCCTGTGTACCGCAACACGCTGAGACTTGTGGAGTGCTCTATGTTCGCTGCTGTTACTGGCCTCGTCTATTTCTTAA GCAACTCCCTCTCAATTGAGAATTACTTTGGATGGTTATTTCCGTTGCCGATTGTGATATCATCACTTAGATGGGGTGTGGCAGCTGGGAGGAAAACAAT GGTAGCAACTGCTATGCTGTTGTTTGTTCTCTCTGGTCCTGTTAAAGCATTGACGTATCTGCTGACTCATGGCACCGTTGGCTTGACAATGGGTTCTTTG TGGAGGTTGCAAGCAAGCTGGACAGTTTCCGTTTTCTGGTGCACGATAGCTCGAGCAACTGGAGCGATTGGTTACGTCCTAACATCGTCATTCTTAATAA GGGAGAACATACTTGCTCTGATTACAGTAAACATCCACGCTTCACTGAGTTACGTGTTTGCTTCTATCGGCATTAACACCATTCCTTCGATGAATTTCAT ATACACACTGTTTGGAACTCTTGTGGTGATAAATAGCGGATTCTCTGTGTTCATACTGCATATGTTACATGCTGTGATCCTGACACGGCTTGGAATGCGG CATTTGTTGAGAGTGCCAGCATGGTTTGACAGGGCCCTTATAAGCTAG
AA sequence Show only first row Show all	>Lus10035081 pacid=23162486 polypeptide=Lus10035081 locus=Lus10035081.g ID=Lus10035081.BGIv1.0 annot-version=v1.0 MTIIIWHSNKEPLPQLSSLEEMNFTRIQNHSCYRPLISQIYQLPSAHHFPETFRFPTPQRFTSPTHLPLFKLLPSISRINASVVDGLRQEDGGDEGLADE VDYLAPDGPVYRNTLRLVECSMFAAVTGLVYFLSNSLSIENYFGWLFPLPIVISSLRWGVAAGRKTMVATAMLLFVLSGPVKALTYLLTHGTVGLTMGSL WRLQASWTVSVFWCTIARATGAIGYVLTSSFLIRENILALITVNIHASLSYVFASIGINTIPSMNFIYTLFGTLVVINSGFSVFILHMLHAVILTRLGMR HLLRVPAWFDRALIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26180			unknown protein		Lus10035081 [exp]	0	1
AT5G23520			smr (Small MutS Related) domai...		Lus10019219 [exp]	6.6	0.7873
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005169 [exp]	7.9	0.8034
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	21.9	0.7613
AT5G45780			Leucine-rich repeat protein ki...		Lus10029241 [exp]	23.3	0.7602
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	23.8	0.7667
AT5G57700			BNR/Asp-box repeat family prot...		Lus10006994 [exp]	27.9	0.7855
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Lus10037239 [exp]	51.4	0.7120
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10027617 [exp]	56.9	0.7074
AT5G10710			unknown protein		Lus10026945 [exp]	59.4	0.7288
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Lus10020143 [exp]	70.3	0.7584

Compare expression of checked genes

Lus10035081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.