Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70780 159 / 3e-51 unknown protein AT1G23150 149 / 4e-47 unknown protein AT5G37730 96 / 1e-25 unknown protein AT4G22758 50 / 5e-08 unknown protein AT2G01554 48 / 6e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031920 [exp] 230 / 4e-79 AT1G70780 172 / 4e-56 unknown protein Lus10034416 [exp] 198 / 2e-66 AT1G70780 168 / 8e-55 unknown protein Lus10019143 [exp] 195 / 3e-65 AT1G70780 167 / 4e-54 unknown protein Lus10039287 [exp] 103 / 1e-28 AT1G70780 104 / 4e-29 unknown protein Lus10027525 [exp] 100 / 1e-27 AT1G70780 104 / 3e-29 unknown protein Lus10017628 [exp] 97 / 1e-26 AT5G37730 102 / 3e-28 unknown protein Lus10009131 [exp] 78 / 5e-19 AT1G70780 92 / 1e-24 unknown protein Lus10033584 [exp] 57 / 2e-11 AT5G37730 78 / 2e-19 unknown protein Lus10020544 [exp] 50 / 4e-08 AT2G27830 181 / 3e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131600 [exp] 181 / 1e-59 AT1G70780 183 / 2e-60 unknown protein Potri.010G110800 [exp] 173 / 1e-56 AT1G70780 188 / 9e-63 unknown protein Potri.017G125300 [exp] 114 / 2e-33 AT1G70780 109 / 2e-31 unknown protein Potri.004G089700 [exp] 105 / 7e-30 AT5G37730 108 / 1e-30 unknown protein Potri.004G188600 [exp] 54 / 2e-09 AT2G27830 160 / 5e-50 unknown protein Potri.009G149200 [exp] 49 / 1e-07 AT2G27830 183 / 6e-59 unknown protein Potri.003G116200 [exp] 45 / 4e-06 AT4G22758 131 / 5e-37 unknown protein Potri.001G116200 [exp] 39 / 0.0004 AT4G22758 117 / 5e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035084 pacid=23162407 polypeptide=Lus10035084 locus=Lus10035084.g ID=Lus10035084.BGIv1.0 annot-version=v1.0 ATGTTGCTTTCAAAGACGAAGAAGAACCAGGGTGGTAACAACAAGGGAGGCAATCGGCTTCTGATCAGCGTGACCGTTCTGGGAAGCGCTGGGCCGATTC GGTTCGTGGTGAGCGAGCAGGAGCTTGTGGCTGCTGTTATTGATACCTCGCTGAAATCTTACGCTCGTGAGGGTCGGCTTCCAGTGCTTGGTTCCGATCT CAATGATTTCTTCCTCTACTGCCCAAGCGCTGGCTCTGGAGCTCTGAGCCCGTGGGAAACAATTGGATCAATCGGATGCCGAAGCTTCATGCTGTCCAAG AAGTCAGCAGCAATGAAGCTGGCCGATGAAGGAGAAACGTCGCCTCCAACGACGCGAGCAGTTGGTCAGAAAGGGAGTGGAAGCTGGAAGACATGGATCA ACAAGTCTTTCAATCTCAAGATATCTTCTCATTAA
AA sequence Show only first row Show all	>Lus10035084 pacid=23162407 polypeptide=Lus10035084 locus=Lus10035084.g ID=Lus10035084.BGIv1.0 annot-version=v1.0 MLLSKTKKNQGGNNKGGNRLLISVTVLGSAGPIRFVVSEQELVAAVIDTSLKSYAREGRLPVLGSDLNDFFLYCPSAGSGALSPWETIGSIGCRSFMLSK KSAAMKLADEGETSPPTTRAVGQKGSGSWKTWINKSFNLKISSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70780			unknown protein		Lus10035084 [exp]	0	1
AT1G01540			Protein kinase superfamily pro...		Lus10036386 [exp]	8.0	0.7620
AT1G57680			unknown protein		Lus10008924 [exp]	9.7	0.7300
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10030786 [exp]	10.1	0.7580
AT5G28150			Plant protein of unknown funct...		Lus10042600 [exp]	12.7	0.7415
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Lus10017537 [exp]	16.0	0.7497
AT3G24530			AAA-type ATPase family protein...		Lus10023642 [exp]	17.6	0.7410
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001174 [exp]	18.5	0.7594
AT5G05260		CYP79A2	cytochrome p450 79a2 (.1)		Lus10023141 [exp]	19.7	0.7154
AT5G45840			Leucine-rich repeat protein ki...		Lus10007516 [exp]	20.2	0.7211
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023143 [exp]	21.5	0.7252

Compare expression of checked genes

Lus10035084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.