Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47760 319 / 4e-108 AtALG3, ALG3 Arabidopsis thaliana asparagine-linked glycosylation 3, asparagine-linked glycosylation 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031921 [exp] 465 / 7e-165 AT2G47760 543 / 0.0 Arabidopsis thaliana asparagine-linked glycosylation 3, asparagine-linked glycosylation 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G131600 [exp] 342 / 3e-116 AT2G47760 548 / 0.0 Arabidopsis thaliana asparagine-linked glycosylation 3, asparagine-linked glycosylation 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF05208 [flax] [poplar] ALG3 ALG3 protein
Representative CDS sequence Show only first row Show all	>Lus10035085 pacid=23162424 polypeptide=Lus10035085 locus=Lus10035085.g ID=Lus10035085.BGIv1.0 annot-version=v1.0 ATGAGGAAAATCCAGCCCGTTCGCCCGGAATCCCAATCTTCTACTGCTGCATTCTTCAAGAATCCCAAATTCGTTGTAGCTGTCGCTTTGCTCCTCTTTG ATGCTGTGCTCACTGCTCTCATCATCGTCTATGTTCCATATACGAAGATTGATTGGGATGCCTACATGTCCCAGGTCACTGGGTTTCTTGAAGGAGAAAA GGATTACAGCCAGTTGAAAGGGGACACTGGGCCGCTGGTTTACCCTGCTGGCTTCCTTTATGTTTATTCTGCTATTCAGTATGTCACTGGAGGGGAGGTC ATTGCTGCTCAGATATTGTTTGGCGTTTTGTACGTCGTAAACCTGGCGATTATCTTATTCATCTATGTGAAAGCAGATGTGCTCCCATGGTGGGCACTTG TGTTGCTTTCTCTCTCGAAAAGGGTGCATTCTATCTTCGTTCTTCGGCTCTTCAATGATTGTTTTGCAATGACACTGTTGCATGCTGCAGTGGCTTTCCT TCTTAACCAACAGTGGCATCTTGGACTCATCCTTTTCAGTGGTGCTGTTTCTATTAAGATGAATGTTTTGCTCTATGCTCCTCCTTTGCTACTCCTTATG TTGAAGGCAATGGATCTCCGTGGGGTGATCTCTGCTTTAGCTGGTGCTGCGTCTGTGAACTTCAAATTTGTCCCTGAACCAATCTTTGTGTCAAAGCAAT TTGCGGTCTCCTTGCTGACAGTTCACCTTGTATCACTCGCTGTTTTTGCTCACTGCAGATGGTGCAAGTTTGAAGGAGGGCTGATGAGATTTCTGCGTGT TAGAGTTTTTTCTTTCCCCGCCATAAAGAGTAGTAGTCCATGGAAGAAGATAAAGGAAGAACGTAAGTCTGATTATGTTAATTTCAGGGTGCCTTTCCCC CCTTTTAATATTAAGGTCGCAATCCTCCTCTAA
AA sequence Show only first row Show all	>Lus10035085 pacid=23162424 polypeptide=Lus10035085 locus=Lus10035085.g ID=Lus10035085.BGIv1.0 annot-version=v1.0 MRKIQPVRPESQSSTAAFFKNPKFVVAVALLLFDAVLTALIIVYVPYTKIDWDAYMSQVTGFLEGEKDYSQLKGDTGPLVYPAGFLYVYSAIQYVTGGEV IAAQILFGVLYVVNLAIILFIYVKADVLPWWALVLLSLSKRVHSIFVLRLFNDCFAMTLLHAAVAFLLNQQWHLGLILFSGAVSIKMNVLLYAPPLLLLM LKAMDLRGVISALAGAASVNFKFVPEPIFVSKQFAVSLLTVHLVSLAVFAHCRWCKFEGGLMRFLRVRVFSFPAIKSSSPWKKIKEERKSDYVNFRVPFP PFNIKVAILL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Lus10035085 [exp]	0	1
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	7.6	0.6988
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	17.4	0.6824
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	23.1	0.5971
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	25.3	0.6751
AT3G03810		EDA30	embryo sac development arrest ...		Lus10013612 [exp]	32.0	0.6251
AT1G63430			Leucine-rich repeat protein ki...		Lus10008018 [exp]	33.7	0.5931
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10008002 [exp]	38.1	0.5947
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10015635 [exp]	41.7	0.6293
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10002288 [exp]	48.4	0.6226
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10026517 [exp]	49.1	0.5456

Compare expression of checked genes

Lus10035085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.