Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43660 268 / 3e-92 Vacuolar iron transporter (VIT) family protein (.1) AT3G43630 254 / 8e-87 Vacuolar iron transporter (VIT) family protein (.1) AT1G21140 251 / 2e-85 Vacuolar iron transporter (VIT) family protein (.1) AT1G76800 233 / 2e-78 Vacuolar iron transporter (VIT) family protein (.1) AT3G25190 203 / 3e-66 Vacuolar iron transporter (VIT) family protein (.1) AT2G01770 42 / 0.0002 ATVIT1, VIT1 vacuolar iron transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031922 [exp] 379 / 1e-135 AT3G43660 286 / 4e-99 Vacuolar iron transporter (VIT) family protein (.1) Lus10028596 [exp] 328 / 2e-115 AT3G43660 279 / 4e-96 Vacuolar iron transporter (VIT) family protein (.1) Lus10042804 [exp] 305 / 3e-106 AT3G43660 276 / 2e-95 Vacuolar iron transporter (VIT) family protein (.1) Lus10029776 [exp] 290 / 2e-100 AT3G43660 273 / 4e-94 Vacuolar iron transporter (VIT) family protein (.1) Lus10031543 [exp] 276 / 7e-95 AT3G43660 268 / 5e-92 Vacuolar iron transporter (VIT) family protein (.1) Lus10025685 [exp] 225 / 1e-74 AT3G43660 241 / 4e-81 Vacuolar iron transporter (VIT) family protein (.1) Lus10018150 [exp] 223 / 1e-73 AT3G43660 244 / 2e-82 Vacuolar iron transporter (VIT) family protein (.1) Lus10015135 [exp] 202 / 9e-67 AT3G43660 200 / 4e-66 Vacuolar iron transporter (VIT) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069400 [exp] 277 / 3e-95 AT3G43630 238 / 5e-80 Vacuolar iron transporter (VIT) family protein (.1) Potri.005G190800 [exp] 271 / 5e-93 AT1G76800 232 / 6e-78 Vacuolar iron transporter (VIT) family protein (.1) Potri.018G106000 [exp] 243 / 9e-82 AT3G43660 219 / 9e-73 Vacuolar iron transporter (VIT) family protein (.1) Potri.011G146100 [exp] 120 / 4e-33 AT3G43660 97 / 3e-24 Vacuolar iron transporter (VIT) family protein (.1) Potri.001G456000 [exp] 108 / 1e-28 AT3G43660 66 / 1e-12 Vacuolar iron transporter (VIT) family protein (.1) Potri.010G104100 [exp] 42 / 0.0001 AT2G01770 320 / 2e-111 vacuolar iron transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10035086 pacid=23162501 polypeptide=Lus10035086 locus=Lus10035086.g ID=Lus10035086.BGIv1.0 annot-version=v1.0 ATGGCCAACAACAACCAATTCCCATCGCCACACAAGGTGGAAGAAGAAGAAGAAGAGCAGCAATTCGACTACGCCAAGAGATCGCAATGGCTTCGAGCAG CAGTTCTCGGAGCTAATGATGGCTTAGTCTCCACAGCATCCCTCATGATGGGCGTGGGAGCTGTGAAACAAGACATCAAGGCCATGATTCTGACGGGATT CGCTGGCCTTGTGGCAGGGGCATGTAGCATGGCCATAGGCGAGTTTGTATCAGTCTATTCACAGTATGACATAGAGGTGGCTCAAATGAAACGGGACAGG GAGAGGAGTCCTACCACCGCAAGGATTGAGGAAGAGGCAGGGGAAGAGAAGGAGAGCTTGCCGAATCCAGTACAAGCAGCGGCTGCTTCGGGTTTGGCTT TCTCGATCGGTGCAATGGTGCCGTTGTTGGCTGCCTCTTTCATCAGGGACTATAAGGTGAGGCTTGGGGTGATGTTTGGAGCAGTGACCTTGGCTTTGGT TTTGTTTGGATGGGTTGGAGCTGTTTTAGGAAAGGCTCCCGTGGTTAAGTCGTCTATGAGGGTTTTGATTGGTGGGTGGGTGGCTATGGCTCTCACTTTT GCTTTGACCAAATCGGTTGACTCATTCCCTATGGATTTGGTTTAA
AA sequence Show only first row Show all	>Lus10035086 pacid=23162501 polypeptide=Lus10035086 locus=Lus10035086.g ID=Lus10035086.BGIv1.0 annot-version=v1.0 MANNNQFPSPHKVEEEEEEQQFDYAKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQYDIEVAQMKRDR ERSPTTARIEEEAGEEKESLPNPVQAAAASGLAFSIGAMVPLLAASFIRDYKVRLGVMFGAVTLALVLFGWVGAVLGKAPVVKSSMRVLIGGWVAMALTF ALTKSVDSFPMDLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43660			Vacuolar iron transporter (VIT...		Lus10035086 [exp]	0	1
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	2.0	0.8817
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10041776 [exp]	3.0	0.8327
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10013777 [exp]	5.9	0.8450
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	9.4	0.8451
AT2G46960		CYP709B1	"cytochrome P450, family 709, ...		Lus10026085 [exp]	13.0	0.8639
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	13.4	0.8528
AT4G17250			unknown protein		Lus10008508 [exp]	16.3	0.8240
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	17.8	0.8446
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10009448 [exp]	18.5	0.8202
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10042086 [exp]	19.3	0.8358

Compare expression of checked genes

Lus10035086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.